PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp4g19770 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C2H2 | ||||||||
Protein Properties | Length: 179aa MW: 20274.5 Da PI: 10.1237 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.0006 | 47 | 69 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++Fs+ L H +H Tp4g19770 47 FECKTCNRRFSSFQALGGHRASH 69 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 16.5 | 2.4e-05 | 94 | 116 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+sF + L H+r+H Tp4g19770 94 HECSICGQSFGTGQALGGHMRRH 116 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.0E-12 | 46 | 71 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.2E-8 | 46 | 116 | No hit | No description |
SMART | SM00355 | 0.16 | 47 | 69 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.346 | 47 | 74 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 49 | 69 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.4E-12 | 94 | 118 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.533 | 94 | 121 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0097 | 94 | 116 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 96 | 116 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0071289 | Biological Process | cellular response to nickel ion | ||||
GO:2000280 | Biological Process | regulation of root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MKRERSEYEE SIKNLDIAKC LMILSQTSMI KQIGMNQFAE SNSSNRFECK TCNRRFSSFQ 60 ALGGHRASHK KPKLTVEQKE VKHLTNNIKG SHMHECSICG QSFGTGQALG GHMRRHRSSM 120 TVEPSQLISP VIPTMPVLKR CSSSKRVLSL DLNLTPLEND LEIIFGKTFF PNIDMKFVV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp4g19770 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006410928.1 | 1e-124 | zinc finger protein ZAT11 | ||||
Swissprot | Q9SLD4 | 1e-111 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | V4NZG8 | 1e-123 | V4NZG8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006410928.1 | 1e-124 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM531 | 28 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 1e-113 | C2H2 family protein |