PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g18890

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

HD-ZIP

Protein Properties

Length: 192aa MW: 22612.6 Da PI: 8.617

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g18890	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.4	2.8e-19	75	130	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +k+ ++t+eql+ Le+ F+++++++ +++ +L+++lgL+ +q+ vWFqNr+a++k+ Tp4g18890 75 KKKKKMTSEQLKFLERSFQQEMKLDPDRKMKLSRELGLQPKQIAVWFQNRKARWKN 130 78999*************************************************95 PP
2	HD-ZIP_I/II	107.6	9.2e-35	75	166	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+++++eq+k+LE+sF++e kL+p+rK++l+reLglqp+q+avWFqnr+AR+k+kqlE ye+L++++d +++e++ L++e +L++ ++ Tp4g18890 75 KKKKKMTSEQLKFLERSFQQEMKLDPDRKMKLSRELGLQPKQIAVWFQNRKARWKNKQLEYLYESLRQELDVVSREKNLLQEELIQLKSMIR 166 59*************************************************************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.13E-20	53	133	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.941	71	131	IPR001356	Homeobox domain
SMART	SM00389	2.7E-17	74	135	IPR001356	Homeobox domain
Pfam	PF00046	1.2E-16	75	130	IPR001356	Homeobox domain
CDD	cd00086	3.53E-16	75	132	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.0E-20	81	131	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	106	129	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MEYWSSPFIN GDYSSSNFIP FHYVDHFSGN QENKCFSSST MVETQGGLLH EQYAPPVMVE 60 SSYGEASNNI NGYEKKKKKM TSEQLKFLER SFQQEMKLDP DRKMKLSREL GLQPKQIAVW 120 FQNRKARWKN KQLEYLYESL RQELDVVSRE KNLLQEELIQ LKSMIRDNGL SKKKQTWESV 180 CSEAISVQFQ LN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00049	PBM	Transfer from AT2G36610	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g18890

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006410832.2	1e-97	homeobox-leucine zipper protein ATHB-22
Swissprot	Q4PSR7	4e-88	ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22
TrEMBL	V4LNY2	4e-98	V4LNY2_EUTSA; Uncharacterized protein
STRING	XP_006410832.1	7e-99	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36610.1	2e-90	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]