PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g17960

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

ERF

Protein Properties

Length: 202aa MW: 22363 Da PI: 6.6354

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g17960	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.4	7.1e-18	54	103	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Tp4g17960 54 IFRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFSTAEMAARAHDVAALAIKG 103 59**998.******854...6********************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.04E-34	53	113	No hit	No description
Pfam	PF00847	1.3E-11	53	103	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.7E-32	54	112	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.48E-21	54	112	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.576	54	111	IPR001471	AP2/ERF domain
SMART	SM00380	3.0E-40	54	117	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.0E-10	55	66	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.0E-10	77	93	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MDHSSSSESH PDDCRRRFRD PPAQATARTV NNNIPNKKRV KEDDDEKVVS KHPIFRGVRM 60 RQWGKWVSEI REPKKKSRIW LGTFSTAEMA ARAHDVAALA IKGGSAHLNF PELAYHLPRP 120 ASADPKDIQA AAAAAAAAVD IDMEVETSSP SPTSTEHSSP AMTAIADDAF SDLPDLLLDV 180 NRKIDGFWDS FPYEKPFFSG SY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-16	48	111	8	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00292	DAP	Transfer from AT2G35700	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g17960

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013634757.1	1e-107	PREDICTED: ethylene-responsive transcription factor ERF038-like
Swissprot	Q9ZQP3	2e-95	ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBL	A0A0D3C4D7	1e-106	A0A0D3C4D7_BRAOL; Uncharacterized protein
TrEMBL	A0A3N6S1H8	1e-106	A0A3N6S1H8_BRACR; Uncharacterized protein
STRING	Bo4g184540.1	1e-107	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2492	23	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35700.1	5e-77	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]