PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g17100

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 297aa MW: 34129.8 Da PI: 4.8585

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g17100	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.2	2.6e-07	175	219	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P Kl+ ae+ + A +Y+k Lq Tp4g17100 175 SIAARERRRRIAEKTHELAKLIPGgH------KLNTAEMFQAAAKYVKFLQ 219 567899***************955......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.417	169	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.19E-10	170	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.7E-10	172	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.7E-5	175	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-8	175	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.02E-4	191	222	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MSSMDCLSHF FNWDPPIQLQ DCFIPDLDMI IPETDGFFFQ SPPQQQFNQP MFQEEAPSQN 60 LLELTHLDSF CDQFLPSQEI SLPYPKAEIF DETHNLDPFL PTPKRQKLLN SSYHCNTHDH 120 FPSPNLNFFN PYDDLDFIPE ASIFPEFQVP DFPLAFRAGR GDQHVTKKPT LSSQSIAARE 180 RRRRIAEKTH ELAKLIPGGH KLNTAEMFQA AAKYVKFLQS QVGILQMMQT KKKGISDVEI 240 ETQVLLDSQA IQEKLSAEEV CLVPCEMVRN LTSEESIWRN PKISREINKL LSTDLAN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g17100

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006410635.2	1e-173	transcription factor bHLH53
Swissprot	Q84RD0	1e-153	BH053_ARATH; Transcription factor bHLH53
TrEMBL	V4MHR8	1e-174	V4MHR8_EUTSA; Uncharacterized protein
STRING	XP_006410635.1	1e-175	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4547	25	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	1e-142	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]