PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g16050
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 213aa    MW: 23831.6 Da    PI: 9.154
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g16050genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.92e-2169118356
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                y+GVr+++ +g+W+AeIrdp   + + +r++lg+f+taeeAa a+++a+ +++g+
  Tp4g16050  69 YRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEEAALAYDKAAFEFRGH 118
                9*******.**********9...3.35*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.35E-2368126IPR016177DNA-binding domain
CDDcd000187.08E-3668127No hitNo description
PROSITE profilePS5103224.94868125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-3468126IPR001471AP2/ERF domain
PfamPF008471.2E-1568118IPR001471AP2/ERF domain
SMARTSM003808.8E-3968131IPR001471AP2/ERF domain
PRINTSPR003673.0E-126980IPR001471AP2/ERF domain
PRINTSPR003673.0E-1291107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MHSGKRPLSP ESTAGKREEK EDLLCCSTLS ESDVSAFVSE LTDQPTTPFM DQSSSLTPQE  60
QSKSRQRNYR GVRQRPWGKW AAEIRDPNKA ARVWLGTFDT AEEAALAYDK AAFEFRGHKA  120
KLNFPEHILI SSTHRHPSTA TSHHRITVMP PPPIAPDILL DRYGQFQSIN SDSSANLSMT  180
MSSSSSSLNQ QGQLPKLEDG ENVKNISIHK RRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2667125160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-2664125163ATERF1
3gcc_A7e-2664125163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g16050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1364561e-171AY136456.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g33710) mRNA, complete cds.
GenBankBT0002361e-171BT000236.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g33710) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013646798.11e-123ethylene-responsive transcription factor ERF112-like
SwissprotP930071e-99EF112_ARATH; Ethylene-responsive transcription factor ERF112
TrEMBLA0A3P5ZCD51e-122A0A3P5ZCD5_BRACM; Uncharacterized protein
STRINGBra005480.1-P1e-121(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.11e-82ERF family protein