PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g14190
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 141aa    MW: 15890.1 Da    PI: 7.5079
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g14190genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.72.8e-0529681054
               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
               + R +++ ++++ L++l+ +      +K + a++L +A++YI+ L
  Tp4g14190 29 KERKEKVGERISALQQLVSPY-----GKTDTASVLLEAMQYIQFL 68
               567788999*********999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.4E-91879IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.6741968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0062774IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-122783IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.67E-52973No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MMMENKRSVS SLEENSMKRH KSDLSFSSKE RKEKVGERIS ALQQLVSPYG KTDTASVLLE  60
AMQYIQFLHE QVKVLSAPYL QTTPTTTQEE LEEYSLRSRG LCLVPMEYTL GVAQTNGADI  120
WAPVKAPTSP AFNLQSNSPF R
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g14190
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024003772.12e-93transcription factor bHLH153 isoform X1
SwissprotQ7XJU22e-85BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A0D3B4G33e-86A0A0D3B4G3_BRAOL; Uncharacterized protein
STRINGBo3g026410.15e-87(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.51e-73bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]