PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g13850

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bZIP

Protein Properties

Length: 414aa MW: 46542.1 Da PI: 6.569

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g13850	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.2	1.1e-10	201	259	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l l+ l+ e+ Tp4g13850 201 KRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVEN 259 9********************************************99998887777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.0E-14	197	261	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.576	199	262	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.18E-10	201	252	No hit	No description
Pfam	PF00170	5.4E-9	201	253	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.0E-11	201	255	No hit	No description
CDD	cd14703	2.51E-22	202	251	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MDREKSPAPC GGLPPPSPSG RCSVFSDTGP TGHGSDANRL SHDMSRMLDN PPKKIGHRRA 60 HSEILTLPDD LSFDSDLGVV GANADGASFS DDTEEDLMSM YLDMDKFNSS ATSSAQVGGE 120 PSGTAWKNES RVHTGSSSNP QNTFTSFGER PRVRHQHSQS MDGSMNINEM LMSGNEDDSV 180 VDAKKSMSAT KLAELALIDP KRAKRIWANR QSAARSKERK TRYIFELERK VQTLQTEATT 240 LSAQLTLLQR DTNGLTVENS ELKLRLQTME QQVHLQDELN EALKEEIQHL KVLTGQVAPN 300 GASAINYGSF GSHQQFYSNN QSMQTILAAQ QLQQLQIHSQ KQQQQQQQQQ QQQQQQQQQQ 360 QQQQQQQQHQ QQQFQFQQQQ LQQLLHHRLQ QQEQQNGIAE MRKQTSSSHG QNES

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MDREKSPAPC GGLPPPSPSG RCSVFSDTGP TGHGSDANRL SHDMSRMLDN PPKKIGHRRA  60
HSEILTLPDD LSFDSDLGVV GANADGASFS DDTEEDLMSM YLDMDKFNSS ATSSAQVGGE  120
PSGTAWKNES RVHTGSSSNP QNTFTSFGER PRVRHQHSQS MDGSMNINEM LMSGNEDDSV  180
VDAKKSMSAT KLAELALIDP KRAKRIWANR QSAARSKERK TRYIFELERK VQTLQTEATT  240
LSAQLTLLQR DTNGLTVENS ELKLRLQTME QQVHLQDELN EALKEEIQHL KVLTGQVAPN  300
GASAINYGSF GSHQQFYSNN QSMQTILAAQ QLQQLQIHSQ KQQQQQQQQQ QQQQQQQQQQ  360
QQQQQQQQHQ QQQFQFQQQQ LQQLLHHRLQ QQEQQNGIAE MRKQTSSSHG QNES

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g13850

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353283	0.0	AK353283.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-D07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006410269.1	0.0	probable transcription factor PosF21
Refseq	XP_006410270.1	0.0	probable transcription factor PosF21
Swissprot	Q04088	0.0	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	E4MXN6	0.0	E4MXN6_EUTHA; mRNA, clone: RTFL01-24-D07
TrEMBL	V4M9E9	0.0	V4M9E9_EUTSA; Uncharacterized protein
STRING	Bostr.24513s0082.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2445	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31370.5	0.0	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]