PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g13700
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 439aa    MW: 49616.3 Da    PI: 5.3111
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g13700genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.3e-10233276654
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   Er RR ++N+++e  + l+P++      K + a+iL+  ++YI++L
  Tp4g13700 233 FTTERERRCHLNERYEAMKMLIPSP-----SKGDRASILQDGIDYINEL 276
                578*********************9.....79**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.61E-10225281No hitNo description
PROSITE profilePS5088813.268227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-12227294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-11227285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-8231276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-7233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MYEESSCFDP NPTVEAIVDN NGGYCESTTA AEIDFPVSQQ FQPPLMVAGS TTNSFNDELK  60
LPTMEEFSVF PSVVSFPNSE TQNQISNDNN NNNHLIHQMI HESNWAVSAD NSGFFMNTSD  120
PNTTTTPIPD LLSLLHLPRC SIPLPSSNLS DIMSGSCFTY DPLYHLNLPP QPPLIPTVND  180
YSGFLLGIDT NTAQRNQPNV GDENNNAQFD SGIIEFSKEI RRKGRGKQKN KPFTTERERR  240
CHLNERYEAM KMLIPSPSKG DRASILQDGI DYINELRRRV SELKYLVERK RCGGRHKKNN  300
EVDNNKSDDR NNDDNDENME KKPESDVVDQ CSSNNSLRCS WLQRKSKVTE VDVRIIDDEV  360
TIKVVQKKKI NCLLVVTKVL DQLHLDLHHV AGGQIGEHYS FLLNTKINEG STIYASAIAN  420
RVIEVVDQHY MAAHPIHNY
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g13700
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5198090.0AJ519809.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor.
GenBankAK1184410.0AK118441.1 Arabidopsis thaliana At2g31210 mRNA for putative bHLH transcription factor (bHLH091), complete cds, clone: RAFL19-68-P06.
GenBankBT0096750.0BT009675.1 Arabidopsis thaliana At2g31210 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481763.10.0PREDICTED: transcription factor bHLH91-like
SwissprotQ8GX460.0BH091_ARATH; Transcription factor bHLH91
TrEMBLV4LMD20.0V4LMD2_EUTSA; Uncharacterized protein
STRINGXP_006410252.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]