PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g13540

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

TCP

Protein Properties

Length: 350aa MW: 38982.6 Da PI: 7.1216

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g13540	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.3	1.4e-34	27	128	1	89
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssas..nsssg 88 a+g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l + + ss s+ + n + Tp4g13540 27 ATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLEISqepenittkpG----------SSPSEPNlvN--TQ 114 589*************************************************************944444432221..........2222222110..11 PP TCP 89 .............k 89 k Tp4g13540 115 tqfvanldpedamK 128 11223344443331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.5E-28	28	157	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.429	30	88	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MGLKGYSVGG DGVGEIVEVQ GGHIIRATGR KDRHSKVFTS KGPRDRRVRL SAHTAIQFYD 60 VQDRLGYDRP SKAVDWLIKK AKSAIDKLEI SQEPENITTK PGSSPSEPNL VNTQTQFVAN 120 LDPEDAMKTF FPATTATTSG GGTNMNFQNY PHHHDDDNIV SRTRTTPNLS QDLGLSLHPF 180 QGNNNNNTVV PETNNFATNH FETFGRISGW NHHDLTMTSS SSPSEQQQQE QERSNGGFMV 240 NHHHHQQPSM MTLLNSQQQQ QVFLGGQQQQ QRGTLQSSLF PHSFRSWDHH HHQTTSDNHH 300 HHNQASPVMF ASSSQFGSHG MMMMQGLSFP IHGEEATQPN SSSSPPNSHL

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MGLKGYSVGG DGVGEIVEVQ GGHIIRATGR KDRHSKVFTS KGPRDRRVRL SAHTAIQFYD  60
VQDRLGYDRP SKAVDWLIKK AKSAIDKLEI SQEPENITTK PGSSPSEPNL VNTQTQFVAN  120
LDPEDAMKTF FPATTATTSG GGTNMNFQNY PHHHDDDNIV SRTRTTPNLS QDLGLSLHPF  180
QGNNNNNTVV PETNNFATNH FETFGRISGW NHHDLTMTSS SSPSEQQQQE QERSNGGFMV  240
NHHHHQQPSM MTLLNSQQQQ QVFLGGQQQQ QRGTLQSSLF PHSFRSWDHH HHQTTSDNHH  300
HHNQASPVMF ASSSQFGSHG MMMMQGLSFP IHGEEATQPN SSSSPPNSHL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	4e-22	35	88	1	54	Putative transcription factor PCF6
5zkt_B	4e-22	35	88	1	54	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g13540

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353025	0.0	AK353025.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-K11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018434158.1	0.0	PREDICTED: transcription factor TCP10
Swissprot	O82277	1e-154	TCP10_ARATH; Transcription factor TCP10
TrEMBL	A0A0D3BTA8	0.0	A0A0D3BTA8_BRAOL; Uncharacterized protein
STRING	Bo4g053680.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14158	19	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	1e-113	TCP domain protein 10

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375]