PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g12380

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

C2H2

Protein Properties

Length: 389aa MW: 42972.1 Da PI: 8.4874

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g12380	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	140	163	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+ F+ +L++Hi H Tp4g12380 140 FPCTACGEIFPKTNLLEHHIAIkH 163 89******************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	6	1	24	No hit	No description
PROSITE profile	PS50157	9.182	140	168	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	142	163	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	7.87E-12	165	388	No hit	No description
Gene3D	G3DSA:3.90.228.10	4.1E-5	317	388	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MAARKLGSLL RQHFLSLFFL LVGCFFFPKG GDCRQKRRKK KLRTVSAASG LSSSSWTYIK 60 RVFLSTTRII SKSRNQTHPN GPLTTLTSAR SSQNSLVTLV QPETMTNQPD SETRIENGFS 120 EISSSDSSPL FFLPLRNEIF PCTACGEIFP KTNLLEHHIA IKHAVSELID GESSTNIVKI 180 IFKSGWPDQG NKIPEIHRIL KIHNSPKILS RFEEYREFVK GKAARSSSNG GGRRWDDERC 240 VADGNELLRF YCSTFMCNLG QKGNSNLCGH QYCSVCGIIG SGFSPKLDGI STLATGWRGH 300 AAVPEEVEEE FGFMNVKRAM LVCRVVAGRV GCDLLADDDD VDKNDGGYDS LLGQGSGSKS 360 GALLRIDDEE LLVFNPRAVL PCFVIVYTV

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MAARKLGSLL RQHFLSLFFL LVGCFFFPKG GDCRQKRRKK KLRTVSAASG LSSSSWTYIK  60
RVFLSTTRII SKSRNQTHPN GPLTTLTSAR SSQNSLVTLV QPETMTNQPD SETRIENGFS  120
EISSSDSSPL FFLPLRNEIF PCTACGEIFP KTNLLEHHIA IKHAVSELID GESSTNIVKI  180
IFKSGWPDQG NKIPEIHRIL KIHNSPKILS RFEEYREFVK GKAARSSSNG GGRRWDDERC  240
VADGNELLRF YCSTFMCNLG QKGNSNLCGH QYCSVCGIIG SGFSPKLDGI STLATGWRGH  300
AAVPEEVEEE FGFMNVKRAM LVCRVVAGRV GCDLLADDDD VDKNDGGYDS LLGQGSGSKS  360
GALLRIDDEE LLVFNPRAVL PCFVIVYTV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	36	41	RRKKKL
2	36	42	RRKKKLR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g12380

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018433029.1	0.0	PREDICTED: uncharacterized protein LOC108805604
TrEMBL	A0A1J3E5S1	0.0	A0A1J3E5S1_NOCCA; Uncharacterized protein
STRING	XP_006410025.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7919	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-169	C2H2 family protein