PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g11880

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

GRAS

Protein Properties

Length: 652aa MW: 74932.9 Da PI: 5.5649

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g11880	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	352	9.1e-108	273	649	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNq 100 ++lL++cA+a+s+gd++ a lL r+++ +sp gd+ qRla++f++AL+arl++s+ + ++ ++ ++ +++ ++ l+a++++ sP++++ ++ + Tp4g11880 273 RTLLTHCAQAISTGDKTTALDLLLRIRQESSPLGDASQRLAHCFANALEARLQGSTGPVIQTYyNAITSLKETAADILKAYRVYLSSSPFVTLMYFFSLR 372 689*************************************************7777776664777777888*********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +Il+a++ ++ +Hi+Df+i +G+QWp ++q ++ R++ p +lRiTg++ p+ g +e++eetg+rLa+++++++vpfe+++++++++e+++++e++++p Tp4g11880 373 MILDAAKDAQVLHIVDFGILYGFQWPMFIQYISGRKDVPQKLRITGIELPQRGfrPAERIEETGRRLAEYCKRFNVPFEYKAIASQNWETIRIDEFDIRP 472 ***********************************************99**************************999********** PP GRAS 199 gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 +E+laVn+ l+l++l de++ e+ +rd++Lkl+++++P+v+v++ + + n++ F rf ea+++ysalfd+++++lpr+++eri Ere+ gre++nv Tp4g11880 473 NEVLAVNVGLRLKNLQDETGGEENcPRDALLKLIRRMKPDVFVHAIVNGSFNAPFFTSRFKEAVYHYSALFDMFDSTLPRDNQERIRFEREFYGREAMNV 572 *******************999********************************************************************** PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 +ace+ +r+er et+++W+ r+ +aGFk+ p++ + ++ + l+k + + v+e+s++l++gWk+r+L++ S+W Tp4g11880 573 IACEEGDRVERPETYKQWQVRMVRAGFKQKPVKADLVELFREKLKKWRcHKDFVVDENSKWLLQGWKGRTLYASSCW 649 *****************************************9999999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.564	246	629	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.1E-105	273	649	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 652 aa Download sequence Send to blast
MDPNFSVNSF EYFDESILLN PNLDSFSSLD FDQNPNFLAD PTPSEENVSS NTLLRYVSQI 60 LMEESVGDKQ SMFYDSLALR KTEEMLQQVI TDSQAQSFTS PDSMVTTSDA SGSIESTCCV 120 DSKIDPPVNE ILVRSIFSDA ESALQFKKGL EEARKFLPNS DQWVINLETE RSKSERLVPV 180 KEEMGSDLLR VKKNHEREVL DFEETRSSKQ SATNVDDGKI TDMFDKVLLL DGECDPQTLS 240 EDKKTQELRS DNKKRGEKKN KNKNKKSQVV DFRTLLTHCA QAISTGDKTT ALDLLLRIRQ 300 ESSPLGDASQ RLAHCFANAL EARLQGSTGP VIQTYYNAIT SLKETAADIL KAYRVYLSSS 360 PFVTLMYFFS LRMILDAAKD AQVLHIVDFG ILYGFQWPMF IQYISGRKDV PQKLRITGIE 420 LPQRGFRPAE RIEETGRRLA EYCKRFNVPF EYKAIASQNW ETIRIDEFDI RPNEVLAVNV 480 GLRLKNLQDE TGGEENCPRD ALLKLIRRMK PDVFVHAIVN GSFNAPFFTS RFKEAVYHYS 540 ALFDMFDSTL PRDNQERIRF EREFYGREAM NVIACEEGDR VERPETYKQW QVRMVRAGFK 600 QKPVKADLVE LFREKLKKWR CHKDFVVDEN SKWLLQGWKG RTLYASSCWV PA

Sequence ? help Back to Top

Protein Sequence Length: 652 aa Download sequence Send to blast

MDPNFSVNSF EYFDESILLN PNLDSFSSLD FDQNPNFLAD PTPSEENVSS NTLLRYVSQI  60
LMEESVGDKQ SMFYDSLALR KTEEMLQQVI TDSQAQSFTS PDSMVTTSDA SGSIESTCCV  120
DSKIDPPVNE ILVRSIFSDA ESALQFKKGL EEARKFLPNS DQWVINLETE RSKSERLVPV  180
KEEMGSDLLR VKKNHEREVL DFEETRSSKQ SATNVDDGKI TDMFDKVLLL DGECDPQTLS  240
EDKKTQELRS DNKKRGEKKN KNKNKKSQVV DFRTLLTHCA QAISTGDKTT ALDLLLRIRQ  300
ESSPLGDASQ RLAHCFANAL EARLQGSTGP VIQTYYNAIT SLKETAADIL KAYRVYLSSS  360
PFVTLMYFFS LRMILDAAKD AQVLHIVDFG ILYGFQWPMF IQYISGRKDV PQKLRITGIE  420
LPQRGFRPAE RIEETGRRLA EYCKRFNVPF EYKAIASQNW ETIRIDEFDI RPNEVLAVNV  480
GLRLKNLQDE TGGEENCPRD ALLKLIRRMK PDVFVHAIVN GSFNAPFFTS RFKEAVYHYS  540
ALFDMFDSTL PRDNQERIRF EREFYGREAM NVIACEEGDR VERPETYKQW QVRMVRAGFK  600
QKPVKADLVE LFREKLKKWR CHKDFVVDEN SKWLLQGWKG RTLYASSCWV PA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-42	276	649	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	242	254	KKTQELRSDNKKR
2	253	260	KRGEKKNK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g11880

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006409948.1	0.0	scarecrow-like protein 34
Swissprot	P0C884	0.0	SCL34_ARATH; Scarecrow-like protein 34
TrEMBL	V4NWZ8	0.0	V4NWZ8_EUTSA; Uncharacterized protein
STRING	XP_006409948.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29065.1	0.0	GRAS family protein