PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp4g11870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 731aa MW: 82745.5 Da PI: 6.4722 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 364.2 | 1.8e-111 | 357 | 728 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++lL++cA+avs +d + a++lL ++++++s++gd ++Rla+yf++ L+arla+ ++++y al++++ts + l+a++++ v+P+ k + + aN+ Tp4g11870 357 LRTLLVSCAQAVSVNDRRTADELLRQVRQHSSSYGDGTERLAHYFANSLEARLAGIGTQVYTALSSKKTS---AFDMLKAYQTYISVCPFKKTAIIFANH 453 6789**************************************************************9999...9************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 I+ + + +++HiiDf+is+G+QWp+L++ +a R++++ +lRiTg++ p+ g +e + etg+rLa+++++++vpfe+n +a+++e++++e+L++++ Tp4g11870 454 SIMHLTVNVKTIHIIDFGISYGFQWPPLIHRIAWRRGNSCKLRITGIELPQRGfrPAEGVIETGHRLARYCQRFNVPFEYNG-IAQKWETIKVEDLKLRE 552 ***************************************************99*****************************.7**************** PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 gE +aVn+ ++l +llde+vs++s+rd+vLkl+k+++P+v++ + ++n++ F++rf e l +ys+lfd+ +++l re+ r++ E+e+ grei+nvv Tp4g11870 553 GEFVAVNSLFRLRNLLDETVSVHSPRDAVLKLIKKIKPDVFIPAILSGSYNAPFFVTRFREVLFHYSSLFDMCDTNLTREDPMRVMFEKEFYGREIMNVV 652 **************************************************************************************************** PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 aceg+er+er e++++W++r +aGFk++pl+++ +++ kl+++ + s+++ v+++ +++++gWk+r +++ S W Tp4g11870 653 ACEGTERVERPESYKQWQARAIRAGFKQLPLEKELVQKLKLMVEVGYkSKEFDVDQDGNWVLQGWKGRIVYASSTW 728 ********************************************8887999************************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.288 | 331 | 708 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.3E-109 | 357 | 728 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 731 aa Download sequence Send to blast |
MGSYSDGFPG SLDNFGFEYQ IDFPGLGNGS YLNDQPSLDI PSPLPPLPTT YPEPYSQQNL 60 AAADADFSDS VLKYISQVLM EEDMEEKPCM FHDALSLQAA EKSLYEALGE KYPDSLPLTT 120 TSPVQLAQSP DGSSSGYASS TTTTTSCDWS FDCLENNRPS WLHTPVPNNF VFQSTSTRSS 180 PKSVGGSNAD FRSSFSDDLV SKMFNDSELA FQFKRGVEEA SKFLPKSTQL VIDVENHTAD 240 LGSKANDPKE HQSVPYRLTG KKSHWREDEH LDEERSKKQS AVYVDETELS EMFDKILLFG 300 QPKEKPLCIL HENFPKEPAK DSSFRKGHKS ETTQASETRG QKPAATGISY MKETPDLRTL 360 LVSCAQAVSV NDRRTADELL RQVRQHSSSY GDGTERLAHY FANSLEARLA GIGTQVYTAL 420 SSKKTSAFDM LKAYQTYISV CPFKKTAIIF ANHSIMHLTV NVKTIHIIDF GISYGFQWPP 480 LIHRIAWRRG NSCKLRITGI ELPQRGFRPA EGVIETGHRL ARYCQRFNVP FEYNGIAQKW 540 ETIKVEDLKL REGEFVAVNS LFRLRNLLDE TVSVHSPRDA VLKLIKKIKP DVFIPAILSG 600 SYNAPFFVTR FREVLFHYSS LFDMCDTNLT REDPMRVMFE KEFYGREIMN VVACEGTERV 660 ERPESYKQWQ ARAIRAGFKQ LPLEKELVQK LKLMVEVGYK SKEFDVDQDG NWVLQGWKGR 720 IVYASSTWVP M |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-45 | 354 | 728 | 2 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp4g11870 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006409947.1 | 0.0 | scarecrow-like protein 33 | ||||
Refseq | XP_024016820.1 | 0.0 | scarecrow-like protein 33 | ||||
Swissprot | P0C883 | 0.0 | SCL33_ARATH; Scarecrow-like protein 33 | ||||
TrEMBL | V4LLG7 | 0.0 | V4LLG7_EUTSA; Uncharacterized protein | ||||
STRING | XP_006409947.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G29060.1 | 0.0 | GRAS family protein |