PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g11870
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GRAS
Protein Properties Length: 731aa    MW: 82745.5 Da    PI: 6.4722
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g11870genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS364.21.8e-1113577281373
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++lL++cA+avs +d + a++lL ++++++s++gd ++Rla+yf++ L+arla+ ++++y al++++ts     + l+a++++  v+P+ k + + aN+
  Tp4g11870 357 LRTLLVSCAQAVSVNDRRTADELLRQVRQHSSSYGDGTERLAHYFANSLEARLAGIGTQVYTALSSKKTS---AFDMLKAYQTYISVCPFKKTAIIFANH 453
                6789**************************************************************9999...9************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 I+  + + +++HiiDf+is+G+QWp+L++ +a R++++ +lRiTg++ p+ g   +e + etg+rLa+++++++vpfe+n  +a+++e++++e+L++++
  Tp4g11870 454 SIMHLTVNVKTIHIIDFGISYGFQWPPLIHRIAWRRGNSCKLRITGIELPQRGfrPAEGVIETGHRLARYCQRFNVPFEYNG-IAQKWETIKVEDLKLRE 552
                ***************************************************99*****************************.7**************** PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                gE +aVn+ ++l +llde+vs++s+rd+vLkl+k+++P+v++ +    ++n++ F++rf e l +ys+lfd+ +++l re+  r++ E+e+ grei+nvv
  Tp4g11870 553 GEFVAVNSLFRLRNLLDETVSVHSPRDAVLKLIKKIKPDVFIPAILSGSYNAPFFVTRFREVLFHYSSLFDMCDTNLTREDPMRVMFEKEFYGREIMNVV 652
                **************************************************************************************************** PP

       GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                aceg+er+er e++++W++r  +aGFk++pl+++ +++ kl+++  + s+++ v+++ +++++gWk+r +++ S W
  Tp4g11870 653 ACEGTERVERPESYKQWQARAIRAGFKQLPLEKELVQKLKLMVEVGYkSKEFDVDQDGNWVLQGWKGRIVYASSTW 728
                ********************************************8887999************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.288331708IPR005202Transcription factor GRAS
PfamPF035146.3E-109357728IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MGSYSDGFPG SLDNFGFEYQ IDFPGLGNGS YLNDQPSLDI PSPLPPLPTT YPEPYSQQNL  60
AAADADFSDS VLKYISQVLM EEDMEEKPCM FHDALSLQAA EKSLYEALGE KYPDSLPLTT  120
TSPVQLAQSP DGSSSGYASS TTTTTSCDWS FDCLENNRPS WLHTPVPNNF VFQSTSTRSS  180
PKSVGGSNAD FRSSFSDDLV SKMFNDSELA FQFKRGVEEA SKFLPKSTQL VIDVENHTAD  240
LGSKANDPKE HQSVPYRLTG KKSHWREDEH LDEERSKKQS AVYVDETELS EMFDKILLFG  300
QPKEKPLCIL HENFPKEPAK DSSFRKGHKS ETTQASETRG QKPAATGISY MKETPDLRTL  360
LVSCAQAVSV NDRRTADELL RQVRQHSSSY GDGTERLAHY FANSLEARLA GIGTQVYTAL  420
SSKKTSAFDM LKAYQTYISV CPFKKTAIIF ANHSIMHLTV NVKTIHIIDF GISYGFQWPP  480
LIHRIAWRRG NSCKLRITGI ELPQRGFRPA EGVIETGHRL ARYCQRFNVP FEYNGIAQKW  540
ETIKVEDLKL REGEFVAVNS LFRLRNLLDE TVSVHSPRDA VLKLIKKIKP DVFIPAILSG  600
SYNAPFFVTR FREVLFHYSS LFDMCDTNLT REDPMRVMFE KEFYGREIMN VVACEGTERV  660
ERPESYKQWQ ARAIRAGFKQ LPLEKELVQK LKLMVEVGYK SKEFDVDQDG NWVLQGWKGR  720
IVYASSTWVP M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-453547282374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g11870
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409947.10.0scarecrow-like protein 33
RefseqXP_024016820.10.0scarecrow-like protein 33
SwissprotP0C8830.0SCL33_ARATH; Scarecrow-like protein 33
TrEMBLV4LLG70.0V4LLG7_EUTSA; Uncharacterized protein
STRINGXP_006409947.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein