PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g11270
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 830aa    MW: 91142.1 Da    PI: 5.0263
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g11270genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.24.2e-11112138127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +kt+lC++f+r G C++G++Ck+aHg+
  Tp4g11270 112 FKTSLCSYFRRQGSCSHGSTCKYAHGE 138
                69***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.2E-14106143IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-9109143IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6111138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544111139IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-9112138IPR000571Zinc finger, CCCH-type
CDDcd005902.66E-4204269No hitNo description
SuperFamilySSF549284.12E-5207273IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3302.9E-5207270IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168747.339295830IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533353.02E-44298323IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.02E-44355494IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.02E-44538651IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1503.1E-66545651IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138473.2E-9595653IPR025714Methyltransferase domain
CDDcd024401.80E-5597651No hitNo description
Gene3DG3DSA:3.40.50.1503.1E-66707769IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.02E-44717770IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059581.1E-7721765IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300725757IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1503.1E-66805830IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.02E-44814830IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MASSSIDELP SAAEALTSQL PSSDITPAPV DSTPSSDPNP TDDAPMASSS IDELSSSVET  60
LKSQSPSDIT PAPIDPVSSS VDVEAVGEKR KRDDEKTNLE SSDPNLTPSP WFKTSLCSYF  120
RRQGSCSHGS TCKYAHGEKE LRQKPDNTWD PTSERGKKAK MSENALKSAE EEEQGEVMFT  180
EDMMDDNDGE GCGDSVHDLS LSKCLVHLPT KWQSDDLKKF IREQGVEFKF AKKRRGMMVG  240
FLTFENAEQL QSGVEILEGK AVNNKNLKIA DVLPRTTDKN GAKNQAAKIK SAREAVTPLA  300
DLSYVDQLEQ KKASIMQMLK KLTRNARKAC PNGKSLPEWV LQSREIGGLS CKLEGIIESP  360
VTNGYRNKCE FSTGYSVEGK LTVGFMLGNF SAGVTAVEEA VNCPNISKIA CRYASIFQSF  420
LENSRLPVWN RFKSCGFWRQ LTVREGSKPS MLLNDEDANT RIAEVMLMVQ VCTTDTDEAE  480
VATEFEELAK AFAEGARASS PPLPLTVLVV QDHVGISNVA PPDCPLRLLP IPMSDNGTNQ  540
DQSTNVLTEA RIHDYINNLR FSISPTAFFQ VNTGAAEKLY SLAGDWADLG PDTLLFDVCC  600
GTGTIGLTLA HRVGMVIGIE MNASAVSDAE WNAKINGITN CKFICSKAED VMSPLLTEYL  660
DVSQMEEIKP LSNAKDDLDK QISSTEEMSN SDHGPPPNIQ GQKDASLEQE QSTKPRFKNV  720
VAIVDPPRPG LHPDVIKALR THPRLKTLVY ISCNPETLVA NAIELCTPSF EKTDQENKGY  780
QRQRRMGTAA LARYRAKKMP ASEPFRPVKA MAVDLFPHTD HCEMVMLLKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A4e-2028365867371Uncharacterized RNA methyltransferase SP_1029
5xj2_A3e-2028365867371Uncharacterized RNA methyltransferase SP_1029
5xj2_B3e-2028365867371Uncharacterized RNA methyltransferase SP_1029
5xj2_C3e-2028365867371Uncharacterized RNA methyltransferase SP_1029
5xj2_D3e-2028365867371Uncharacterized RNA methyltransferase SP_1029
5zq0_A4e-2028365868372Uncharacterized RNA methyltransferase SP_1029
5zq1_A4e-2028365867371Uncharacterized RNA methyltransferase SP_1029
5zq8_A3e-2028365867371Uncharacterized RNA methyltransferase SP_1029
5zq8_B3e-2028365867371Uncharacterized RNA methyltransferase SP_1029
5zth_A4e-2028365868372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g11270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409870.20.0zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A1J3J3A70.0A0A1J3J3A7_NOCCA; Zinc finger CCCH domain-containing protein 24 (Fragment)
STRINGBra011947.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120031516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]