PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp4g11140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ARF | ||||||||
Protein Properties | Length: 705aa MW: 77854 Da PI: 7.5498 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.4 | 6.7e-24 | 114 | 215 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF +++ + l+ Tp4g11140 114 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TVIAKDIHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFL--RSEPGDLC 209 89****************************987555555..8************************************************..4589999* PP EEEE-S CS B3 94 vkvfrk 99 v+++r+ Tp4g11140 210 VGIRRA 215 ***996 PP | |||||||
2 | Auxin_resp | 114.6 | 9e-38 | 283 | 366 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+ +a+ +++FevvY+Prast+eF+vk+++v++a++++++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+ Tp4g11140 283 AVARAACGQAFEVVYYPRASTPEFCVKASDVRAAMRIRWCSGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 366 56778899**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.7E-37 | 107 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.02E-29 | 110 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.97E-21 | 113 | 214 | No hit | No description |
PROSITE profile | PS50863 | 13.014 | 114 | 216 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-21 | 114 | 215 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-21 | 114 | 216 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.4E-32 | 284 | 366 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 17.515 | 592 | 680 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009743 | Biological Process | response to carbohydrate | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048589 | Biological Process | developmental growth | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 705 aa Download sequence Send to blast |
MEQEKSLDPQ LWHACAGSMV QIPSVNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV 60 AVKFLADAET DEVYSKITLL PLPGNDLDLE NDAVLGLTPS PDGNGNGNEK PASFAKTLTQ 120 SDANNGGGFS VPRYCAETIF PRLDYTAEPP VQTVIAKDIH GETWKFRHIY RGTPRRHLLT 180 TGWSTFVNQK KLIAGDSIVF LRSEPGDLCV GIRRAKRGDL GSNGLGSDNN NNSSYPGFSG 240 FLRDDETTAA KLMMMKRNGS GGGNGIDVNA PGGRVRVEAM TEAVARAACG QAFEVVYYPR 300 ASTPEFCVKA SDVRAAMRIR WCSGMRFKMA FETEDSSRIS WFMGTVSAVQ VADPIRWPNS 360 PWRLLQVAWD EPDLLQNVKR VSPWLVELVS NMPAIHLSPF SPRKKLRIPQ PFDFPFDGTK 420 FPIFSPGFAN NNGESMCYLS NDNNNAPAGI QGARQAQQLF GSPSPSLLSD LNLNSYSGNK 480 LQQSSPAMFL SGFNSSHHYD NIVMSRQARD TEFNNNISCS LTMGNPGLVQ DKKKSGPVKT 540 HQFLLFGQPI LTEQQVINRK RSLEEEAKAA KEEKGSADRG LTWHYGLQGL ETGHCKVFME 600 SEDVGRTLDL SVIGSYQELN RKLAEMFCIE ERSDLLTHVV YRDANGVIKR IGDEPFSDFM 660 RATKRLTIKM DIGGDNVRKT WITGIRNGEN GIDSSNKTGP LSIFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 3e-79 | 7 | 387 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp4g11140 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353058 | 0.0 | AK353058.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-J20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006409860.1 | 0.0 | auxin response factor 10 | ||||
Refseq | XP_024003967.1 | 0.0 | auxin response factor 10 | ||||
Swissprot | Q9SKN5 | 0.0 | ARFJ_ARATH; Auxin response factor 10 | ||||
TrEMBL | E4MX11 | 0.0 | E4MX11_EUTHA; Auxin response factor | ||||
TrEMBL | V4MFJ2 | 0.0 | V4MFJ2_EUTSA; Auxin response factor | ||||
STRING | XP_006409860.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |