PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g11010
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 291aa    MW: 31495.1 Da    PI: 7.8253
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g11010genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00046122144123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C+ C+++Fs+   L  H  +H
  Tp4g11010 122 YECKTCNRTFSSFQALGGHRASH 144
                99**********99999998887 PP
2zf-C2H213.30.00025198220123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++Cg  F++   L  H+r+H
  Tp4g11010 198 HECSICGSEFTSGQALGGHMRRH 220
                78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.1E-12121146IPR007087Zinc finger, C2H2
SuperFamilySSF576679.34E-9121144No hitNo description
SMARTSM003550.063122144IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.97122149IPR007087Zinc finger, C2H2
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
SuperFamilySSF576679.34E-9193220No hitNo description
Gene3DG3DSA:3.30.160.600.001196220IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-11197221IPR007087Zinc finger, C2H2
PROSITE profilePS501579.868198225IPR007087Zinc finger, C2H2
SMARTSM003550.019198220IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280200220IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MMSQDHEVGS DQTQIIKGKR TKRQRSSSST FLMATATTVT STSSSAGGGG GGGRTVSDEY  60
NSAVSSPVTT TDCTEEEEDM AICLIMLARG AAPSPDLKNS RKTDKILHQK ISSTENSSFY  120
VYECKTCNRT FSSFQALGGH RASHKKPRAS IDEKTKLPLM QLKSSASEEG QNNHFKVSGS  180
TLASQASNII ISKANKVHEC SICGSEFTSG QALGGHMRRH RTATTVVSPA ATAEVSRNST  240
EEEIENLSRS MEQRKYLPLD LNLPAPEDDL RESKFQGIVF SATPALIDCH Y
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g11010
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004277.11e-173zinc finger protein ZAT5
SwissprotQ681X41e-160ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLV4M4X41e-170V4M4X4_EUTSA; Uncharacterized protein
STRINGXP_006409841.11e-171(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-137C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]