PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp4g04160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 600aa MW: 66339.2 Da PI: 6.5094 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86.5 | 2.5e-27 | 194 | 247 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++Wt eLH++Fv av+qL G ekA Pk+il+lm+v+ Lt+e+v+SHLQk+Rl Tp4g04160 194 KPRVVWTVELHKKFVAAVNQL-GFEKAMPKKILDLMNVEKLTRENVASHLQKFRL 247 79*******************.9*******************************8 PP | |||||||
2 | Response_reg | 84.8 | 2.6e-28 | 19 | 127 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+++ +++l+++l + +y +v+++ ++++alell+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++ah++++++ + + Ga Tp4g04160 19 VLAVDDDQTCLRILETLLHRCQY-HVTTTNQAQKALELLRENKnkFDLVISDVDMPDMDGFKLLELVGL-EMDLPVIMLSAHSDPKYVMKGVTHGAC 113 799********************.***************888888*******************87754.558************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +eel + Tp4g04160 114 DYLLKPVRIEELKN 127 ***********987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 8.5E-170 | 1 | 598 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 5.6E-42 | 16 | 167 | No hit | No description |
SuperFamily | SSF52172 | 1.34E-35 | 16 | 136 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 3.2E-33 | 17 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.303 | 18 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.7E-25 | 19 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.74E-28 | 20 | 132 | No hit | No description |
PROSITE profile | PS51294 | 11.056 | 191 | 250 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-29 | 191 | 252 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.69E-19 | 192 | 251 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-23 | 194 | 247 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.6E-7 | 196 | 245 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 600 aa Download sequence Send to blast |
MTVEQDCVAL DQFPVGMRVL AVDDDQTCLR ILETLLHRCQ YHVTTTNQAQ KALELLRENK 60 NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD PKYVMKGVTH GACDYLLKPV 120 RIEELKNIWQ HVVRIRFDKN RGSNNCDKKD GSGNEGVANF DQNNGKANRK RKDQYNEDED 180 EERDDNDDPS SQKKPRVVWT VELHKKFVAA VNQLGFEKAM PKKILDLMNV EKLTRENVAS 240 HLQKFRLYLK RISGTQQAIM ANSDLHFLQM NNGLEGFHHR PIPVGSGQFH GGAATAMRPF 300 PPNGILGRLN TPSGIGVRSL SSPSFLQNPT DLGKFHHVSS LPLNHSDGGN ILQGLPMPLE 360 FDQLQANNNN NNIRNINNNN KSITGNTMAF PSFPTQQSSL PNNNLLVLEG HPQASPSAFP 420 GHQVNKRLEH WSNAVSSSAF PPPPAQNSNS VSHQFDVSPL PHSKPDSLEW NTHNGSSSYS 480 IPFCDSTTPL SPALDTNPRA FYRTAEFDPN ANAQAGDFYD SLQMRQSGNY GPTTDAMLTS 540 NPKEGFIVGQ HKLHSGFMGA EAGSLDDIVN STMKQEQSQG DLSGGDLGYG GGFSSLRTCI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 6e-27 | 190 | 253 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). Involved in activating SHY2 during meristem growth and controls PIN expression via activation of SHY2 (PubMed:20605455). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:20605455}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp4g04160 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP002685 | 1e-145 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013631146.1 | 0.0 | PREDICTED: two-component response regulator ARR12 isoform X1 | ||||
Refseq | XP_013743914.1 | 0.0 | two-component response regulator ARR12 isoform X1 | ||||
Swissprot | P62598 | 0.0 | ARR12_ARATH; Two-component response regulator ARR12 | ||||
TrEMBL | A0A1J3G8V0 | 0.0 | A0A1J3G8V0_NOCCA; Two-component response regulator ARR12 (Fragment) | ||||
STRING | Bo4g157430.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1981 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G25180.1 | 0.0 | response regulator 12 |