PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g03750
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family CO-like
Protein Properties Length: 311aa    MW: 33709.8 Da    PI: 7.023
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g03750genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.52.8e-08445439
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
               r C+ ++   ++lfC+ +  +lC +C  ++H        H++
  Tp4g03750  4 RLCDSCKLTAATLFCRADAAFLCGECDGKIHTAnklasrHER 45
               68*****999*********************55666767765 PP
2zf-B_box27.27.9e-094691342
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                + C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  Tp4g03750 46 VWLCEVCEQAPAHVTCKADAASLCVTCDRDIHSAnplsrrHERVPV 91
               689*****************************66899999999986 PP
3CCT68.61.6e-23246289144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                Rea++lRY+eKrk+R+FeK+irY+sRKa+Ae RpR+KGrF+k++
  Tp4g03750 246 REARVLRYREKRKNRRFEKTIRYASRKAYAEMRPRIKGRFAKRT 289
                9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.324148IPR000315B-box-type zinc finger
SMARTSM003362.2E-14148IPR000315B-box-type zinc finger
PfamPF006431.2E-6445IPR000315B-box-type zinc finger
CDDcd000211.03E-6448No hitNo description
PROSITE profilePS5011910.8084491IPR000315B-box-type zinc finger
PfamPF006435.6E-74691IPR000315B-box-type zinc finger
CDDcd000211.48E-84791No hitNo description
SMARTSM003361.3E-104991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.668246288IPR010402CCT domain
PfamPF062033.8E-17246288IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MASRLCDSCK LTAATLFCRA DAAFLCGECD GKIHTANKLA SRHERVWLCE VCEQAPAHVT  60
CKADAASLCV TCDRDIHSAN PLSRRHERVP VTPFYDAAAP GRGSSSSAAA KSASSANFLD  120
EDADVSMEAA SWLLPNPSIK EGGVVEIPNL FSDLDCSAVD PKMEASENSS GYDGVVPVQN  180
KSLFLNDDYF NFDFSASKTT FPHGFTCINQ TVSSTSLDVA LVPETETTTT MTTTATPAVQ  240
LSPAEREARV LRYREKRKNR RFEKTIRYAS RKAYAEMRPR IKGRFAKRTD SKGGDGGDVG  300
VYGGFGVVPS F
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g03750
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405043.10.0zinc finger protein CONSTANS-LIKE 3
SwissprotQ9SK531e-150COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLV4NJM40.0V4NJM4_EUTSA; Uncharacterized protein
STRINGXP_006405043.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.11e-125CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]