PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g03560
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 334aa    MW: 36294.2 Da    PI: 10.2669
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g03560genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30260317359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +dp+++++ YegeH+h+
  Tp4g03560 260 DEYSWRKYGQKPIKGSPHPRGYYKCSTFrGCPARKHVERALDDPTMLIVSYEGEHRHQ 317
                9************************8766****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.9E-17207256IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.7E-32246318IPR003657WRKY domain
PROSITE profilePS5081129.838253319IPR003657WRKY domain
SuperFamilySSF1182907.59E-26256318IPR003657WRKY domain
SMARTSM007747.3E-36258318IPR003657WRKY domain
PfamPF031064.1E-26260317IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MTVDIMRLPK MEDQTAIQEA ASQGLKSMEH LIRVLSNRPE DHNVDCSEIT DFTVSKFKKV  60
ISLLNRTGHA RFRRGPVHSS LSSSSSSAAA PPRPPPPPPP LVSQPAPPSQ ISAPAPVITP  120
ASFAHSHQQS VTLDFTRPNV FGAKTKSSEI VEFAKESFSV SENSSFMSSA ITGDGSVSKG  180
SSIFLAPAPA AHVASSAKPP LAGLPYRKRC FEHDHSENFS GKISGSGNGK CHCKKSRKNR  240
MKKTVRVPAI SAKIADIPPD EYSWRKYGQK PIKGSPHPRG YYKCSTFRGC PARKHVERAL  300
DDPTMLIVSY EGEHRHQQSA MQENISPSLV FGSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-20246317272WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00278DAPTransfer from AT2G24570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g03560
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529900.0AK352990.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-16-C05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404990.10.0probable WRKY transcription factor 17
SwissprotQ9SJA80.0WRK17_ARATH; Probable WRKY transcription factor 17
TrEMBLE4MWU30.0E4MWU3_EUTHA; mRNA, clone: RTFL01-16-C05
TrEMBLV4M2H80.0V4M2H8_EUTSA; Uncharacterized protein
STRINGXP_006404990.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25082772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24570.11e-171WRKY DNA-binding protein 17
Publications ? help Back to Top
  1. Ali MA,Wieczorek K,Kreil DP,Bohlmann H
    The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots.
    PLoS ONE, 2014. 9(7): p. e102360
    [PMID:25033038]
  2. Ali MA, et al.
    Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis.
    J. Plant Physiol., 2018. 226: p. 12-21
    [PMID:29689430]