PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g02570
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 394aa    MW: 44944.3 Da    PI: 10.2101
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g02570genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536.2e-1759143188
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                f++ ++++d++k++ l lp +f++e+g+++++  t+ l  ++g +W v+l  r ++gr  ++kGWk+ ++angL+ g++++++ ++++
  Tp4g02570  59 FVTLTLRHDSFKNSGLGLPLPFMRENGMNEPG--TIALSGKDGTKWVVNL-LRESQGRKSFRKGWKDCARANGLEIGESFTLESIWKD 143
                67778899*******************99665..8***************.677888899***********************88854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.219152IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-5648IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-7649IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-1652149IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-1855148IPR015300DNA-binding pseudobarrel domain
CDDcd100178.58E-1458145No hitNo description
PROSITE profilePS5086312.36559156IPR003340B3 DNA binding domain
SMARTSM010194.4E-2159153IPR003340B3 DNA binding domain
PfamPF023622.1E-1659144IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MANLLRESSG RMSLGKGSKD FAKANRLKLG EPFTLELIWE NTTHVLSLLS TEFRSQNRFV  60
TLTLRHDSFK NSGLGLPLPF MRENGMNEPG TIALSGKDGT KWVVNLLRES QGRKSFRKGW  120
KDCARANGLE IGESFTLESI WKDATHMNSI DVIFNYFIGV DKEFKFNYWR LLSKSKFFLH  180
TNLDDDGTPP HNAETDKRQE WYEKVYHVLM LQSRPMFSTS SRKVRAKNTT TCSRLFSAAH  240
NASHAYLDNL QPLNEPVVGS SRKTTQIRLS TLGFVDNQTA LPATDRNHEL EALKLSIRDM  300
SPKVHRASSS PTEIEHILKE TQKTLFTTKI TNTLIRDPDK IKIPSFEGNS EIGNHMNDFT  360
IAMGRARFSP KRMLDTVKFS WKVLEVSHLH VFCA
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g02570
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78281641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.11e-35B3 family protein