PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g02330
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 177aa    MW: 19169.5 Da    PI: 9.5846
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g02330genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-182877255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+e Aa+a++ a  +l+g
  Tp4g02330 28 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPEAAARAYDTAVFYLRG 77
               69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.8132885IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-212886IPR016177DNA-binding domain
SMARTSM003802.1E-382891IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-302986IPR001471AP2/ERF domain
PfamPF008473.4E-122977IPR001471AP2/ERF domain
CDDcd000182.17E-272987No hitNo description
PRINTSPR003674.7E-92940IPR001471AP2/ERF domain
PRINTSPR003674.7E-95167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
METGAKVTAT VTATATMGIG TRKRDLKPYK GIRMRKWGKW VAEIREPNKR SRIWLGSYST  60
PEAAARAYDT AVFYLRGPSA RLNFPELLAG LNVSGGGGGR DGGGDMSAAY IRRKAAEVGA  120
QVDALGTTVV VKSGDYEDKE NRDGVKSGNG SLERVDLNKL PDPENSDDDD DECVKRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-162785463ATERF1
3gcc_A8e-162785463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197103GGRDGGG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g02330
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_179915.13e-92DREB and EAR motif protein 3
SwissprotO221743e-93ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A397ZL975e-98A0A397ZL97_BRACM; Uncharacterized protein
STRINGAT2G23340.11e-91(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.11e-81DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]