PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g01820
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HD-ZIP
Protein Properties Length: 279aa    MW: 30228.8 Da    PI: 7.7538
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g01820genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.1e-18112166256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ ++tkeq   Lee F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Tp4g01820 112 RKKLRLTKEQSALLEESFKHHSTLNPKQKQVLARQLSLRPRQVEVWFQNRRARTK 166
                788899***********************************************98 PP
2HD-ZIP_I/II123.21.2e-39112201191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+keq++lLEesF+++++L+p++K+ lar+L l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l++en rL+ke +eL+ +l
    Tp4g01820 112 RKKLRLTKEQSALLEESFKHHSTLNPKQKQVLARQLSLRPRQVEVWFQNRRARTKLKQTEVDCEILKKCCETLTDENIRLQKEIQELK-TL 201
                  69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.973108168IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-16109171IPR009057Homeodomain-like
SuperFamilySSF466894.71E-18110176IPR009057Homeodomain-like
SMARTSM003893.6E-15110172IPR001356Homeobox domain
PfamPF000462.2E-15112166IPR001356Homeobox domain
CDDcd000863.78E-16112169No hitNo description
PROSITE patternPS000270143166IPR017970Homeobox, conserved site
PfamPF021839.1E-10168201IPR003106Leucine zipper, homeobox-associated
SMARTSM003405.7E-23168211IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGFDDSCNTG LVLGLGLSPT PNNYNNAIKR SSGYKLETSL TLSLSSDPSV TVVAGADQLC  60
RQTSSHSGVS SFSTGRVVKR ERDGGEESPE EEETTERVIS DYHEDEEGVS ARKKLRLTKE  120
QSALLEESFK HHSTLNPKQK QVLARQLSLR PRQVEVWFQN RRARTKLKQT EVDCEILKKC  180
CETLTDENIR LQKEIQELKT LKLSHQPFYM HMPASTLTMC PSCERIGGSS GGGNGGGGAG  240
GGGSVATTVV VDGGTAKGAF SISSKPHFFN PFTNPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160168RRARTKLKQ
2229243SGGGNGGGGAGGGGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g01820
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2292180.0AK229218.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-50-N10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885765.11e-168homeobox-leucine zipper protein HAT9
SwissprotP466031e-153HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBLA0A1J3IVG71e-171A0A1J3IVG7_NOCCA; Homeobox-leucine zipper protein HAT9
STRINGfgenesh2_kg.4__202__AT2G22800.11e-168(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.11e-123HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]