PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g00440
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family BBR-BPC
Protein Properties Length: 295aa    MW: 33144.5 Da    PI: 9.7437
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g00440genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3221.8e-9812951301
  GAGA_bind   1 mdddgsre..rnkgyye.................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkl 81 
                m++ g++e  r ++ y                  ++++l   +++++ms++aerda+i+ern+a+s+kk+ava+rd+a++qrdkal+er+kal+erdn++
  Tp4g00440   1 MENGGQYEngRYRPDYSkgaqsmwnmlpqhqikeQHNALV--MNKKIMSILAERDAAIQERNQAVSAKKEAVAARDEALQQRDKALTERDKALIERDNAF 98 
                7888887778888855558888888888777754446666..99******************************************************** PP

  GAGA_bind  82 lalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkke 181
                +al+++ensl++a       lsg k  d          +d+ + + e++kl++ pi++ ++e+ ++k +k   r+k+  ++++ k kk +e+ ++ v+++
  Tp4g00440  99 AALQHHENSLNFA-------LSGGKRYD----------GDDGFSIGETHKLDVVPISSIPPEVANTKVTK---RKKE-NKQRQPKGKKVGEDLNRLVAAP 177
                ********96655.......58999998..........6888999*****************99999888...3333.3344456666788999****** PP

  GAGA_bind 182 saderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsn 281
                +  ++ +++++s ++ ln v++De t+PvPvC+CtG+ rqCYkWGnGGWqS+CCttt+S++PLP+++++r++R++grKmS+++f++lL +L aeGydls+
  Tp4g00440 178 G--KKCRTDWDSNEVCLNLVTFDERTMPVPVCTCTGSARQCYKWGNGGWQSSCCTTTLSQHPLPQMPNKRHSRVGGRKMSGNVFSRLLGRLGAEGYDLSC 275
                9..57*********************************************************************************************** PP

  GAGA_bind 282 pvDLkdhWAkHGtnkfvtir 301
                pvDLkd+WA+HGtn+++ti+
  Tp4g00440 276 PVDLKDYWARHGTNRYITIK 295
                *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.6E-1581295IPR010409GAGA-binding transcriptional activator
PfamPF062171.7E-922295IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MENGGQYENG RYRPDYSKGA QSMWNMLPQH QIKEQHNALV MNKKIMSILA ERDAAIQERN  60
QAVSAKKEAV AARDEALQQR DKALTERDKA LIERDNAFAA LQHHENSLNF ALSGGKRYDG  120
DDGFSIGETH KLDVVPISSI PPEVANTKVT KRKKENKQRQ PKGKKVGEDL NRLVAAPGKK  180
CRTDWDSNEV CLNLVTFDER TMPVPVCTCT GSARQCYKWG NGGWQSSCCT TTLSQHPLPQ  240
MPNKRHSRVG GRKMSGNVFS RLLGRLGAEG YDLSCPVDLK DYWARHGTNR YITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g00440
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885000.10.0protein BASIC PENTACYSTEINE4
RefseqXP_020885001.10.0protein BASIC PENTACYSTEINE4
RefseqXP_020885003.10.0protein BASIC PENTACYSTEINE4
SwissprotQ8S8C60.0BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLD7LL180.0D7LL18_ARALL; ATBPC4/BBR/BPC4/BPC4
STRINGfgenesh2_kg.4__42__AT2G21240.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.20.0basic pentacysteine 4