PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g32030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 218aa MW: 25232.1 Da PI: 5.4416 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.1 | 4.1e-20 | 60 | 113 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++t+eq++ Le F ++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ Tp3g32030 60 KRKLTDEQVRMLEMSFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 113 4589************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 123.7 | 8.8e-40 | 59 | 150 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+l++eqv++LE+sF e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE +y++Lk+a+++++ e++rL++ev +L+e+l++ Tp3g32030 59 RKRKLTDEQVRMLEMSFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRLEDEYTKLKNAHENVVVEKCRLDSEVIHLKEQLHD 150 8****************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.26E-18 | 52 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.86 | 54 | 114 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-19 | 57 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.78E-15 | 59 | 115 | No hit | No description |
Pfam | PF00046 | 1.9E-17 | 60 | 113 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 61 | 120 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.4E-5 | 85 | 94 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 89 | 112 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.4E-5 | 94 | 110 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MNVDDHNLLL ISQMYPNVVY TSSVPQQGES KAVRPRRKRK SKSVTTAEDG GDGSNGWFRK 60 RKLTDEQVRM LEMSFGDEHK LESERKDRLA SELGLDPRQV AVWFQNRRAR WKNKRLEDEY 120 TKLKNAHENV VVEKCRLDSE VIHLKEQLHD AEREIQRLAQ RVEVASSNSP ISSSVSVEAN 180 QTTPFFGDYD VGDDGDGYEN LFFSPEYIDG LEWMSQFM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 33 | 37 | RPRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g32030 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024016586.1 | 1e-134 | homeobox-leucine zipper protein ATHB-21 isoform X1 | ||||
Swissprot | Q9ZU70 | 1e-125 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | V4NUX9 | 1e-133 | V4NUX9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006409134.1 | 1e-132 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2208 | 26 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 6e-98 | homeobox protein 21 |
Publications ? help Back to Top | |||
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