PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g32030
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HD-ZIP
Protein Properties Length: 218aa    MW: 25232.1 Da    PI: 5.4416
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g32030genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14.1e-2060113457
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                ++++t+eq++ Le  F  ++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Tp3g32030  60 KRKLTDEQVRMLEMSFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 113
                4589************************************************95 PP

2HD-ZIP_I/II123.78.8e-4059150293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +kr+l++eqv++LE+sF  e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE +y++Lk+a+++++ e++rL++ev +L+e+l++
    Tp3g32030  59 RKRKLTDEQVRMLEMSFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRLEDEYTKLKNAHENVVVEKCRLDSEVIHLKEQLHD 150
                  8****************************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.26E-1852115IPR009057Homeodomain-like
PROSITE profilePS5007116.8654114IPR001356Homeobox domain
SMARTSM003891.3E-1957118IPR001356Homeobox domain
CDDcd000863.78E-1559115No hitNo description
PfamPF000461.9E-1760113IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-2061120IPR009057Homeodomain-like
PRINTSPR000311.4E-58594IPR000047Helix-turn-helix motif
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PRINTSPR000311.4E-594110IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MNVDDHNLLL ISQMYPNVVY TSSVPQQGES KAVRPRRKRK SKSVTTAEDG GDGSNGWFRK  60
RKLTDEQVRM LEMSFGDEHK LESERKDRLA SELGLDPRQV AVWFQNRRAR WKNKRLEDEY  120
TKLKNAHENV VVEKCRLDSE VIHLKEQLHD AEREIQRLAQ RVEVASSNSP ISSSVSVEAN  180
QTTPFFGDYD VGDDGDGYEN LFFSPEYIDG LEWMSQFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13337RPRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g32030
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024016586.11e-134homeobox-leucine zipper protein ATHB-21 isoform X1
SwissprotQ9ZU701e-125ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLV4NUX91e-133V4NUX9_EUTSA; Uncharacterized protein
STRINGXP_006409134.11e-132(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.16e-98homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]