PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g31950
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 307aa    MW: 35663.4 Da    PI: 9.1222
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g31950genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-05245267123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+Cp+C+ +F ++  +  H+ +H
  Tp3g31950 245 YTCPKCNGVFDTSQKFAAHMLSH 267
                9*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0086245267IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058245272IPR007087Zinc finger, C2H2
PROSITE patternPS000280247267IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSSIPNRFNS YSDDTLNYHG FVPNSMNHNS KMVRSMVTTS DQMNHGDLFS SSPSFSYYQN  60
SHVSSSSFGL NNSHMTYHMK RDIDSFSSAE YIPIKDNPHF SQVSFTQTIT NTFSAIVPTN  120
TVFNIQNDIQ RVQRAKDYET NIWNRPTFQP PNFLDENFKI LNPKPLNAIF PHQDTSYRQH  180
LDMFPLSSRN NHVLHLPQDG QSLKKSTKPA KLHRKTTDYF DCEVGERRDN DGRTHSLPYE  240
KYGPYTCPKC NGVFDTSQKF AAHMLSHYKT ETSQERDERY RARNKNKYRK LNSETHGGSK  300
NIKLEDE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00264DAPTransfer from AT2G15740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g31950
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935483e-43AB493548.1 Arabidopsis thaliana At2g15740 gene for hypothetical protein, partial cds, clone: RAAt2g15740.
GenBankAC0062483e-43AC006248.4 Arabidopsis thaliana chromosome 2 clone F9O13 map mi398, complete sequence.
GenBankCP0026853e-43CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597141.11e-143PREDICTED: uncharacterized protein LOC106305307
TrEMBLA0A3P6EC891e-143A0A3P6EC89_BRAOL; Uncharacterized protein
STRINGA0A087HDL41e-135(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G15740.11e-103C2H2-like zinc finger protein