PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g31560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | SRS | ||||||||
Protein Properties | Length: 223aa MW: 25050.6 Da PI: 6.4947 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 199.3 | 1.2e-61 | 62 | 208 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssaeskke 99 rs t+sCqdCGnqak++C+h+RCRtCCks+g+dC thv+stW+p+akrrerqq ++++++++ + e+ +kr +e + ++l+s+ l++ Tp3g31560 62 RSATISCQDCGNQAKRGCTHMRCRTCCKSQGLDCPTHVRSTWIPIAKRRERQQPIETPTANRNGHGggVENIPKRYKEF--DLPATLDSSGLEMD----- 154 67899************************************************99999988887764455555655554..66666666665554..... PP DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 et+ +Peevss+a+frcvr+s+ ddg+ ++aYqt+v i+GhvfkGiLy+qG+e+ Tp3g31560 155 -ETTIFPEEVSSDALFRCVRMSGTDDGDSQYAYQTTVGIAGHVFKGILYNQGPES 208 .4567************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.8E-59 | 65 | 207 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.7E-26 | 67 | 109 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 8.8E-29 | 159 | 206 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MAGIGSSRNN EEDTQQKTNW LWYQNISSSN TSHNNQQQIW QQQSPHLYPD QINVCDVTTS 60 SRSATISCQD CGNQAKRGCT HMRCRTCCKS QGLDCPTHVR STWIPIAKRR ERQQPIETPT 120 ANRNGHGGGV ENIPKRYKEF DLPATLDSSG LEMDETTIFP EEVSSDALFR CVRMSGTDDG 180 DSQYAYQTTV GIAGHVFKGI LYNQGPESMF MPGTQFYENP PRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g31560 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009102280.1 | 1e-124 | PREDICTED: protein SHI RELATED SEQUENCE 4 isoform X2 | ||||
Refseq | XP_013651437.1 | 1e-124 | protein SHI RELATED SEQUENCE 4-like | ||||
Refseq | XP_018508512.1 | 1e-124 | PREDICTED: protein SHI RELATED SEQUENCE 4 isoform X2 | ||||
Swissprot | Q9SI19 | 1e-114 | SRS4_ARATH; Protein SHI RELATED SEQUENCE 4 | ||||
TrEMBL | A0A397YHC1 | 1e-128 | A0A397YHC1_BRACM; Uncharacterized protein | ||||
STRING | Bra039917.1-P | 1e-123 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15117 | 15 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18120.1 | 1e-108 | SHI-related sequence 4 |