PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp3g30500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 260aa MW: 28861.3 Da PI: 7.5468 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00047 | 130 | 151 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+dC+k+F ++ L H tH Tp3g30500 130 ECEDCKKVFGSHQALCGHKETH 151 7*****************9999 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 0.026 | 51 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.097 | 129 | 156 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.2 | 129 | 151 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.8E-4 | 130 | 151 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 131 | 151 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.69E-5 | 193 | 219 | No hit | No description |
Pfam | PF13912 | 1.6E-12 | 194 | 218 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.074 | 194 | 216 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.141 | 194 | 221 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 196 | 216 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence Send to blast |
MTNTSDSDPN FNIPFESSNV ILPSYNQNPR KKRTKSSNNV TRSSPSKPKP FWSLKALYGH 60 MRCHPERQWR GIDPPPNHQR TVTPPPNNQR TVTPPPSSLV PVTLEEDHDI ASSLLMLANG 120 STTGLEGRLE CEDCKKVFGS HQALCGHKET HNQDEGCLAI TSVTEDPLPP PPHQEIVDQD 180 HKNKRLKLVS GINHQCNICL RVFSSGQALG GHMRCHWERD QKEKNQDSTV IDLNVPASTN 240 LPGSSSNTLS ECSLDLRLGI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Mediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00621 | PBM | Transfer from AT2G17180 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp3g30500 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006409340.1 | 1e-113 | zinc finger protein ZAT2 | ||||
Swissprot | Q9SIJ0 | 6e-92 | ZAT2_ARATH; Zinc finger protein ZAT2 | ||||
TrEMBL | V4ME42 | 1e-112 | V4ME42_EUTSA; Uncharacterized protein | ||||
STRING | XP_006409340.1 | 1e-113 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4619 | 18 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G17180.1 | 1e-92 | C2H2-like zinc finger protein |