PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp3g30490

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Nin-like

Protein Properties

Length: 956aa MW: 105968 Da PI: 5.0826

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp3g30490	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89	3.8e-28	650	700	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++ Tp3g30490 650 EKTIGLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRHHGITRWPSRKIKKV 700 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.018	639	720	IPR003035	RWP-RK domain
Pfam	PF02042	3.8E-24	653	700	IPR003035	RWP-RK domain
SuperFamily	SSF54277	9.53E-24	847	943	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.9E-23	856	940	No hit	No description
PROSITE profile	PS51745	26.802	858	941	IPR000270	PB1 domain
SMART	SM00666	5.9E-27	858	941	IPR000270	PB1 domain
CDD	cd06407	2.27E-42	859	940	No hit	No description
Pfam	PF00564	8.0E-16	859	940	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 956 aa Download sequence Send to blast
MEDDGGSDGG EGNGGFSPNS SFGAFPETAM DLDFMDELLF DGCWLETTDS KSLKQTEETA 60 TASTAMNDNS PFLCFGENPS QDFSNEETER MFLSSSSYLK DNKSMNQDLF NKDETSSEQA 120 EKFLLEEAEI GRSWWIAPRA SEGLSSSVKE RLLQAISGLD EAVQDKNFLV QIWVPFQQEG 180 KNFLTTLAQP HLFNQKYSSL AKYRHVSETY NFPADEGSKD VGLPGRVFLQ KFPEWTPDVR 240 FFRSEEYPRI KEAQKCDVRG SLALPVFGRG SGTCLGVVEI VTTTQKMNYR PELENICKAL 300 EAVDLRSSSN LKPPSIEFLQ VYNDFYYAAL PEISDFLGSV CRSYDLPLAL SWAPCARHGK 360 GGSRHSDENF SQCVSTIDSA CFVLDEQSNN FLEACSEHHL LQGEGIVGKA FKANKLFFVP 420 EVTTFSKTNY PLAHHAKISG LHAALAVPLK RKCNGLVEFV LEFFFPKACL DTEAKQEMLK 480 SLSVTLQQDF RSLNLVIDKD LELEVVLLVR EDMVFSENPL TGAETAESLR DIHLQESSWI 540 SHMIKANEKG KDVSLSWEYQ NEDPKDDFKL PSGWDSSQTD PVPNNFPLEA ERFQQASSSG 600 LRVDTGPSTE SASTSGLRVD TGPSTESAST GGGNMLRSRK PGEKRRTKTE KTIGLEVLRQ 660 YFAGSLKDAA KSIGVCPTTL KRICRHHGIT RWPSRKIKKV GHSLKKLQLV MDSVQGAQGS 720 IPLDSFYTSF PELSSPNMSS NGPSLKSNEQ LQHMNVPTKN GGLVEEKTAP MSPSASCSKS 780 SGSSTKTANT LQIAEDADAV LKKAHSEAEL HNGNQEETKC LARNHSTQSH KIFKEPPLLE 840 NVPPVPGSSN MSLRTGGAIK VKATFGEARI RFTLLPSWGY RELQQEIARR FNIDDVSWFD 900 LKYLDDDKEW VLLTCEADLE ECIDIYRSSQ SQTIIISLHE AFQVKLGGSF GSTGAS

Sequence ? help Back to Top

Protein Sequence Length: 956 aa Download sequence Send to blast

MEDDGGSDGG EGNGGFSPNS SFGAFPETAM DLDFMDELLF DGCWLETTDS KSLKQTEETA  60
TASTAMNDNS PFLCFGENPS QDFSNEETER MFLSSSSYLK DNKSMNQDLF NKDETSSEQA  120
EKFLLEEAEI GRSWWIAPRA SEGLSSSVKE RLLQAISGLD EAVQDKNFLV QIWVPFQQEG  180
KNFLTTLAQP HLFNQKYSSL AKYRHVSETY NFPADEGSKD VGLPGRVFLQ KFPEWTPDVR  240
FFRSEEYPRI KEAQKCDVRG SLALPVFGRG SGTCLGVVEI VTTTQKMNYR PELENICKAL  300
EAVDLRSSSN LKPPSIEFLQ VYNDFYYAAL PEISDFLGSV CRSYDLPLAL SWAPCARHGK  360
GGSRHSDENF SQCVSTIDSA CFVLDEQSNN FLEACSEHHL LQGEGIVGKA FKANKLFFVP  420
EVTTFSKTNY PLAHHAKISG LHAALAVPLK RKCNGLVEFV LEFFFPKACL DTEAKQEMLK  480
SLSVTLQQDF RSLNLVIDKD LELEVVLLVR EDMVFSENPL TGAETAESLR DIHLQESSWI  540
SHMIKANEKG KDVSLSWEYQ NEDPKDDFKL PSGWDSSQTD PVPNNFPLEA ERFQQASSSG  600
LRVDTGPSTE SASTSGLRVD TGPSTESAST GGGNMLRSRK PGEKRRTKTE KTIGLEVLRQ  660
YFAGSLKDAA KSIGVCPTTL KRICRHHGIT RWPSRKIKKV GHSLKKLQLV MDSVQGAQGS  720
IPLDSFYTSF PELSSPNMSS NGPSLKSNEQ LQHMNVPTKN GGLVEEKTAP MSPSASCSKS  780
SGSSTKTANT LQIAEDADAV LKKAHSEAEL HNGNQEETKC LARNHSTQSH KIFKEPPLLE  840
NVPPVPGSSN MSLRTGGAIK VKATFGEARI RFTLLPSWGY RELQQEIARR FNIDDVSWFD  900
LKYLDDDKEW VLLTCEADLE ECIDIYRSSQ SQTIIISLHE AFQVKLGGSF GSTGAS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp3g30490

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006409346.1	0.0	protein NLP1
Refseq	XP_024016455.1	0.0	protein NLP1
Refseq	XP_024016456.1	0.0	protein NLP1
Swissprot	Q8H111	0.0	NLP1_ARATH; Protein NLP1
TrEMBL	V4M3L3	0.0	V4M3L3_EUTSA; Uncharacterized protein
STRING	XP_006409346.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein

Publications ? help Back to Top
Suzuki W,Konishi M,Yanagisawa S The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor. Plant Signal Behav, 2014. [PMID:24270631]