PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g29620
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ARR-B
Protein Properties Length: 425aa    MW: 48473.2 Da    PI: 7.0369
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g29620genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like46.21e-14237283653
    G2-like   6 WtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 
                Wt e H +F++a++ L G +   P +il++mk + Lt +hv SHLQ Y
  Tp3g29620 237 WTLERHMKFLSAISIL-GDKDSHPESILRIMKDPNLTQHHVSSHLQEY 283
                ****************.8999**************************9 PP
2Response_reg27.22e-10231311111
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESE CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakd 96 
                   +l++d + +    l+++le+  y +v  +   ++a+ ++++++ + l++  +emp++d + + +++++++  +  i++  +++ +    +l   a  
     Tp3g29620  23 ILLIDHDTTSVATLTSILEQFSY-KVMNVNVVSKAVSIIEKQKnILLVIANMEMPHIDSHSFHTSLQTKD--IFLILINPEAKTDKSSSCLTKKACY 116
                   899********************.99999999999999977777************************88..************************* PP

                   EEESS--HHHHHHHH CS
  Response_reg  97 flsKpfdpeelvkav 111
                   fl +p++++++ +++
     Tp3g29620 117 FLKNPISEKDIKNML 131
                   ***********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011016.31422135IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.3E-723131IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23005.7E-1223154No hitNo description
SuperFamilySSF521727.97E-923160IPR011006CheY-like superfamily
SuperFamilySSF466891.56E-9234285IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-12236284IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.9E-14236284IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MAENFAFDVL ENKNPERDGD NYILLIDHDT TSVATLTSIL EQFSYKVMNV NVVSKAVSII  60
EKQKNILLVI ANMEMPHIDS HSFHTSLQTK DIFLILINPE AKTDKSSSCL TKKACYFLKN  120
PISEKDIKNM LQCVSPKKSQ ELKKPNVVKH KEGDMEEHIQ QIETFRESLK RQRTSQSYLL  180
GRLPFSKNFA TSETYQKINN VANDGWKVKP LCPVEIDKTR KEENKIESNL GRSMNLWTLE  240
RHMKFLSAIS ILGDKDSHPE SILRIMKDPN LTQHHVSSHL QEYIAQVDPL NDTLSKKELR  300
TTDKTPNLAK NLISAKKPIK ERDTKTLMFL LGGKLDLNNH PFFGNVSNNL SMKLYRFPET  360
TSNISPFNID PSPILETRNN TSVVNIQSKT QISHEIHNTA MEGEDKSNDD SECMDGIDNV  420
SNEDI
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g29620
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020865809.11e-110putative two-component response regulator-like APRR6
SwissprotQ9C9F61e-110APRR6_ARATH; Putative two-component response regulator-like APRR6
TrEMBLV4KBF21e-112V4KBF2_EUTSA; Uncharacterized protein
STRINGXP_006391168.11e-112(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136851424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68210.11e-113pseudo-response regulator 6