PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g26870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C2H2 | ||||||||
Protein Properties | Length: 237aa MW: 27023.3 Da PI: 8.5976 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 23.8 | 1.1e-07 | 40 | 64 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk F+ +s+L++H+ +H Tp3g26870 40 HVCKeiGCGKAFKYPSQLQKHQDSH 64 79********************998 PP | |||||||
2 | zf-C2H2 | 21.7 | 5.4e-07 | 130 | 155 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kC+ C+ +Fs snL++H++ H Tp3g26870 130 FKCEveGCSSTFSKASNLQKHMKAvH 155 89********************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-7 | 38 | 64 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.54E-5 | 38 | 66 | No hit | No description |
SMART | SM00355 | 0.0018 | 40 | 64 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.053 | 40 | 69 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 2.1E-5 | 40 | 64 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 42 | 64 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.78 | 72 | 97 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.0E-4 | 74 | 95 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 74 | 97 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 17 | 100 | 121 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.34E-9 | 111 | 165 | No hit | No description |
SMART | SM00355 | 1.0E-4 | 130 | 155 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.152 | 130 | 160 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.9E-8 | 130 | 155 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 132 | 155 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.8E-5 | 156 | 182 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 8.1 | 161 | 187 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 163 | 187 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MAMSVGMLRY FIVMTIVART IPITVILTRT ILVIAIVKQH VCKEIGCGKA FKYPSQLQKH 60 QDSHVKLESV ETFCSEPGCM KYFTNEECLK AHIRSCHQRI SCEICGSRHL KKNIKRHLRT 120 HGEDSSPGEF KCEVEGCSST FSKASNLQKH MKAVHEDIRP FVCGFPGCGM RFAYKHVRNN 180 HENSGCHIYT CGDFVEADED FTSRPRGGVK RKQVTAEMLI RKRVMPPQFD PEEHETC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gli_A | 2e-12 | 42 | 181 | 4 | 154 | PROTEIN (FIVE-FINGER GLI) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g26870 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ630478 | 0.0 | AJ630478.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g72050D. | |||
GenBank | AY054225 | 0.0 | AY054225.1 Arabidopsis thaliana At1g72050/F28P5_6 mRNA, complete cds. | |||
GenBank | AY066042 | 0.0 | AY066042.1 Arabidopsis thaliana At1g72050/F28P5_6 mRNA, complete cds. | |||
GenBank | AY186610 | 0.0 | AY186610.1 Arabidopsis thaliana transcription factor IIIA (TFIIIA) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006301795.1 | 1e-137 | transcription factor IIIA | ||||
Swissprot | Q84MZ4 | 1e-135 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | R0IDC6 | 1e-136 | R0IDC6_9BRAS; Uncharacterized protein | ||||
STRING | XP_006301795.1 | 1e-136 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4714 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.1 | 1e-137 | transcription factor IIIA |