PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g21400
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 358aa    MW: 39496.9 Da    PI: 5.3288
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g21400genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.7e-10197244455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +    ++   Ka +L + ++Y++sLq
  Tp3g21400 197 SHSLAERARREKISERMTLLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 244
                8**************************....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.9E-17191262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.79E-11191248No hitNo description
Gene3DG3DSA:4.10.280.102.5E-17193262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542193243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-7197244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-10199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MNMEKQTEQT LNYLPLGQSD PFGNGNEGTI GDFLGRFCNP QETSPLTLQS FSLNPQISEN  60
FPIRFPPYPG RFGSDREFGV LGSQQTGQES NKSSLLDPDS DRAQTTKSNS RKRKSIPIGN  120
GKESPASSSL TASNSKISGE NVGSKAGKRS KQDEAGSSKN VIEKCDSKGD NKDDAKPPEP  180
PKDYIHVRAR RGQATDSHSL AERARREKIS ERMTLLQDLV PGCNRITGKA VMLDEIINYV  240
QSLQRQVEFL SMKLATVNPR MEFNANAALS TEGESLTQSL YAIACSEQRL PSGYYSLAKN  300
MPRFSDTQFP SSDGFVQAET PVFWENDLQS IVQMGFGDIQ QQSNNDCSEP TLQMKLEP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109114SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00376DAPTransfer from AT3G23690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g21400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0654410.0AY065441.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
GenBankAY0965360.0AY096536.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020887229.10.0transcription factor bHLH77
SwissprotQ9LK480.0BH077_ARATH; Transcription factor bHLH77
TrEMBLV4L4R90.0V4L4R9_EUTSA; Uncharacterized protein
STRINGCagra.0026s0060.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74062039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]