PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g20880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ERF | ||||||||
Protein Properties | Length: 138aa MW: 15955.5 Da PI: 8.8475 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.5 | 4.3e-20 | 19 | 70 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr+++ +g+++AeIrdps ng +r +lg+f tae+Aa+a+++a+ +l+g+ Tp3g20880 19 RFRGVRRRP-WGKFAAEIRDPSRNG--ARLWLGTFETAEDAARAYDRAAFNLRGH 70 69*******.**********98887..**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.64E-18 | 18 | 78 | No hit | No description |
SuperFamily | SSF54171 | 2.03E-23 | 19 | 78 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.513 | 19 | 77 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-31 | 19 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-36 | 19 | 83 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.1E-14 | 19 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-11 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-11 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MEGSNRMSNS QSPDDKQARF RGVRRRPWGK FAAEIRDPSR NGARLWLGTF ETAEDAARAY 60 DRAAFNLRGH LAILNFPNEY YSRMDDYSLR PPYSSSSSSS GSSSTGVSRQ NQREVFEFEY 120 LDDRVLEELL DSEERKKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-31 | 16 | 125 | 11 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g20880 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB025608 | 1e-124 | AB025608.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14B15. | |||
GenBank | AJ580377 | 1e-124 | AJ580377.1 Arabidopsis thaliana mRNA for putative ethylene responsive element binding protein. | |||
GenBank | CP002686 | 1e-124 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010512193.1 | 1e-78 | PREDICTED: ethylene-responsive transcription factor ERF098 | ||||
Swissprot | Q9LTC5 | 3e-73 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A1J3H8J2 | 1e-76 | A0A1J3H8J2_NOCCA; Uncharacterized protein | ||||
STRING | XP_010512193.1 | 5e-78 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 8e-64 | ERF family protein |
Publications ? help Back to Top | |||
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