PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g20530
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HSF
Protein Properties Length: 402aa    MW: 46983.1 Da    PI: 4.7677
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g20530genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.75e-35591512103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y+++ed+++++++sws+  nsf+v+d++ f+ ++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i+
     Tp3g20530  59 FLIKTYDLVEDSRTNHVVSWSQADNSFIVWDPQAFSMTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDR---------WEFANEGFLRGQKHLLKTIR 146
                   9********************999*****************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
     Tp3g20530 147 RRKTS 151
                   **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.9E-3554148IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.3E-3855148IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-5955148IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-185982IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-3059148IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-1897109IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434098122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-18110122IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDHPYRFIKE EFPTGFNDSP SPPSSYLYSN SMPPNDPITT TLSSPQPIEG LHESGPPPFL  60
IKTYDLVEDS RTNHVVSWSQ ADNSFIVWDP QAFSMTLLPR FFKHNNFSSF VRQLNTYGFR  120
KVNPDRWEFA NEGFLRGQKH LLKTIRRRKT SNNNQMQPPQ SSSQQQSLDN CCIEVGRYGL  180
DGDMDSLRRD RQVLMMELVK LRQQQQNTKR YLKLIEEKLK KTESKQQQMM SFLARAMQNP  240
DFLQQLMEQK EKRKEIEEEI SKKRQRPINQ GTRNVVCVEE YNDDGGVYGR YGNDAGSSSA  300
FFDMKQETYG DMSEFEMSDL DRLAMHIQGL GDQSNREDVL DVEKRNEEEQ QQERYQKENN  360
EIYGEGFWED LLNEGQKFDF EGDEENVDVL IEQLGYLGSS SH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-235415112123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g20530
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0459740.0AY045974.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds.
GenBankAY0793740.0AY079374.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013732918.10.0heat stress transcription factor A-6b-like
SwissprotQ9LUH80.0HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLM4E4U60.0M4E4U6_BRARP; Uncharacterized protein
STRINGBra023800.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-174heat shock transcription factor A6B