PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g19810
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 415aa    MW: 47431.2 Da    PI: 6.4164
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g19810genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.2e-08731126
               --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
               ykt+lC  + ++G C++ ++C+FaHg
  Tp3g19810  7 YKTKLCILYKKSGNCSR-PNCSFAHG 31
               9****************.*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.0E-12438IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6436IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.108633IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-6731IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MSGSSMYKTK LCILYKKSGN CSRPNCSFAH GAAELRRPGE SSSFTGRRYN LDSDLRNKLG  60
RQFSPEQRHS LDRSGRRVQR FSGHENPRPF ERRRDEDYRE NRRYDDRSDY APGLKVKDRI  120
EVRQKDEGNK FLGYNNVLEE QLKDVELDVK ILTDDKLRLE ASFERKAQEA DILTSRIQEL  180
ETEVDREKEE CKRITSSTKK FVKEYNRSQS RLQKLGNQLS MYLLGNEGND RDANIDIVSN  240
EENNGPNLRT ASDSQNELQN TSSLSRKRHY VDQYTTNKPV EDALIGRGEE DKVEKVKRPT  300
RWNMVSKSFS EEGSGGRNDE DAVNKSSPKE DNWKRRRFSS GTSSSNKVMS PTSMAAGAVN  360
EVAELDEENP QAAKESPLIS LPPPPPFSDA HFQGDEEDVN VDVIEQKKAN DVDSV
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g19810
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406234.10.0zinc finger CCCH domain-containing protein 40
SwissprotQ93XW70.0C3H40_ARATH; Zinc finger CCCH domain-containing protein 40
TrEMBLV4LYT80.0V4LYT8_EUTSA; Uncharacterized protein
STRINGXP_006406234.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100692127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.10.0C3H family protein