PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g19390
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 351aa    MW: 39031.5 Da    PI: 6.1393
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g19390genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08262302954
                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 r+RR+ri +++  L++l+P       +K++ a++L +A +Y+k L
  Tp3g19390 262 ARQRRERISEKIRVLQTLVPGG-----TKMDTASMLDEAANYLKFL 302
                69******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.123253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-13258312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-13259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.05E-11259307No hitNo description
Gene3DG3DSA:4.10.280.103.6E-12261311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-6262302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEGLESVYAQ AMYGMTREGK IMEHQGSDLI WGGGNELMAR ELCSSSSSQQ LINPNLSSCF  60
MSDLGLNGEI QHHQYVGNRA TSLDPSSLDC LLSATTNSNN TSTEDDEGIS VLFSDCQTLW  120
SFGGVSSAES ENREITTETT TKPKSLKRNR GNGDETGSHF RLVHHPQDDS EKGNFKLIYD  180
EDQSKSKKPR TEKERGGSSN ISFQHSTSLS DDVEPDAEAI AQMKEMIYRA AAFRPVNFGL  240
EIVEKPKRKN VKISTDPQTV AARQRRERIS EKIRVLQTLV PGGTKMDTAS MLDEAANYLK  300
FLRAQVKAME NLRPKVDPTT LSFSSPSSFP LFHPSFLPLQ NPNQIHHHPE C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262267RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g19390
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886170.0AF488617.1 Arabidopsis thaliana clone bHLH087 putative bHLH transcription factor mRNA, complete cds.
GenBankAP0013050.0AP001305.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MHC9.
GenBankBT0203640.0BT020364.1 Arabidopsis thaliana At3g21330 gene, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406283.10.0transcription factor bHLH87
SwissprotQ8S3D20.0BH087_ARATH; Transcription factor bHLH87
TrEMBLV4NMP90.0V4NMP9_EUTSA; Uncharacterized protein
STRINGXP_006406283.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79602641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]