PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g19150
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GATA
Protein Properties Length: 284aa    MW: 31164.6 Da    PI: 6.7929
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g19150genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.4e-17206241134
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                C++Cgt++  Tp++Rrgp+g++tLCnaCGl+++ kg
  Tp3g19150 206 CRHCGTSEksTPMMRRGPEGPRTLCNACGLMWANKG 241
                *********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.9E-116297IPR010399Tify domain
PROSITE profilePS5132014.1346297IPR010399Tify domain
PfamPF062009.2E-116596IPR010399Tify domain
PfamPF062031.5E-15130172IPR010402CCT domain
PROSITE profilePS5101713.066130172IPR010402CCT domain
PROSITE profilePS501149.236200256IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-10200253IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.52E-13203265No hitNo description
Gene3DG3DSA:3.30.50.101.1E-15205247IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.0E-15206241IPR000679Zinc finger, GATA-type
CDDcd002021.01E-14206253No hitNo description
PROSITE patternPS003440206233IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDDLHVNNGG MHNGGVQDPM QYEHHGMMDD HTDDGMNEGL ETDIPSHLGN TSDHRGEVVD  60
RGSENGDQLT LSFQGQVYVF DRVLPEKVQA VLLLLGGREV PQTLPTTLGS PHQNNRGLSG  120
TPQRFSAPQR QASLLRFREK RKGRNFDKTI RYTVRKEVAL RMQRKKGQFT SAKSSNEDSA  180
STGSDWGSSQ SWALDGSEIQ KPEALCRHCG TSEKSTPMMR RGPEGPRTLC NACGLMWANK  240
GALRDLSKAP PPQAAQNLPA NKNDDSNLEA DQMIAVAGDI SNSQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g19150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638694.10.0PREDICTED: GATA transcription factor 24-like isoform X2
RefseqXP_013693130.10.0GATA transcription factor 24 isoform X2
SwissprotQ8GXL71e-174GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A078IM270.0A0A078IM27_BRANA; BnaC05g30820D protein
TrEMBLA0A0D3CHP90.0A0A0D3CHP9_BRAOL; Uncharacterized protein
STRINGBo5g103560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-155ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]