PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g18910
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 364aa    MW: 41577.9 Da    PI: 6.9311
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g18910genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-05204223120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                ++Cp C k+F+r  n++ H+
  Tp3g18910 204 FSCPLCFKTFNRYNNMQMHM 223
                89*****************9 PP

2zf-C2H212.90.00033288310123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C  Cgk F  k + ++H +++
  Tp3g18910 288 FACRRCGKAFAVKGDWRTHEKNC 310
                78*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.1E-5204223IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.66204231IPR007087Zinc finger, C2H2
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
SuperFamilySSF576673.69E-6274308No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5275308IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767288308IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MSDPACIFKN GFVDYYDYNF NYSTSLSHIY NSNGSFYYPR NFTNINPNST SPDSPPLREA  60
LPLLSLSPIH KHQEAIVPHH EYYFMETAEN SSNSNFLDHD LDQRQETRHH DVTVDLHLGL  120
PNLGGDAIAY GGGGSSSSDV ILDSTDQEHH HDYHDQDRHQ YQGVEVTLAS HDHDDCHGGV  180
QRGNHHHHYW IPTPSQILMG PTQFSCPLCF KTFNRYNNMQ MHMWGHGSQY RKGPESLRGT  240
QPTAMLRLPC YCCAPGCKNN IDHPRARPLK DFRTLQTHYK RKHGARPFAC RRCGKAFAVK  300
GDWRTHEKNC GKLWYCSCGS DFKHKRSLKD HVKAFGNGHV PCFGIDCFGD HEDEEAASDV  360
EQQE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g18910
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118110.0AJ311811.2 Arabidopsis thaliana mRNA for WIP4 protein (At3g20880 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458256.10.0PREDICTED: zinc finger protein WIP4-like
SwissprotQ8W0300.0ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLA0A078J2W50.0A0A078J2W5_BRANA; BnaA01g36760D protein
STRINGBra023918.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.10.0WIP domain protein 4
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]