PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g18910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C2H2 | ||||||||
Protein Properties | Length: 364aa MW: 41577.9 Da PI: 6.9311 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.5e-05 | 204 | 223 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Tp3g18910 204 FSCPLCFKTFNRYNNMQMHM 223 89*****************9 PP | |||||||
2 | zf-C2H2 | 12.9 | 0.00033 | 288 | 310 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F k + ++H +++ Tp3g18910 288 FACRRCGKAFAVKGDWRTHEKNC 310 78*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.1E-5 | 204 | 223 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.66 | 204 | 231 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 206 | 226 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.69E-6 | 274 | 308 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.0E-5 | 275 | 308 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.767 | 288 | 308 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MSDPACIFKN GFVDYYDYNF NYSTSLSHIY NSNGSFYYPR NFTNINPNST SPDSPPLREA 60 LPLLSLSPIH KHQEAIVPHH EYYFMETAEN SSNSNFLDHD LDQRQETRHH DVTVDLHLGL 120 PNLGGDAIAY GGGGSSSSDV ILDSTDQEHH HDYHDQDRHQ YQGVEVTLAS HDHDDCHGGV 180 QRGNHHHHYW IPTPSQILMG PTQFSCPLCF KTFNRYNNMQ MHMWGHGSQY RKGPESLRGT 240 QPTAMLRLPC YCCAPGCKNN IDHPRARPLK DFRTLQTHYK RKHGARPFAC RRCGKAFAVK 300 GDWRTHEKNC GKLWYCSCGS DFKHKRSLKD HVKAFGNGHV PCFGIDCFGD HEDEEAASDV 360 EQQE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g18910 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ311811 | 0.0 | AJ311811.2 Arabidopsis thaliana mRNA for WIP4 protein (At3g20880 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018458256.1 | 0.0 | PREDICTED: zinc finger protein WIP4-like | ||||
Swissprot | Q8W030 | 0.0 | ZWIP4_ARATH; Zinc finger protein WIP4 | ||||
TrEMBL | A0A078J2W5 | 0.0 | A0A078J2W5_BRANA; BnaA01g36760D protein | ||||
STRING | Bra023918.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20880.1 | 0.0 | WIP domain protein 4 |
Publications ? help Back to Top | |||
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