PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp3g18680

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 463aa MW: 50199.6 Da PI: 6.7769

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp3g18680	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.3	8.5e-06	354	392	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++++ L++l+ + +K + a++L +A+eYIk L Tp3g18680 354 VRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 392 5778999*********98.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.735	343	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0075	349	398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-11	353	407	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.17E-6	353	397	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.3E-10	357	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MGDHHDFINS GSWWKVSSSS STSSSSSMRA SSIESGGSAV FHDKLHHHSL ATDHHLQMIG 60 LGLSSQSPVD QWNQSLLRGD SKAETSFGVM LQENLNLDAT SNANANTTSS TTSYHLQESD 120 SSHHHQALWR DPQINNNNDF KPQLNMTSNN RGFFLDHQFS PHGSSSTDSS TVTCQGFSVD 180 NSSNTLYGAA ATATPNSSSA MFHHQQHQGA GFSLPGSSDQ QPSRNHQQSN LGYSQFGSST 240 GNYDQMATAL PSTWFLRSSP PKPHSPLRFS NNATFWNPAA SAGNAGPTHH DASSNFFPAL 300 QPPQIHAPSF DEQPKSISEI RDSSSNEVKR GGGDQPATKR AKSEAASPSP AFKVRKEKMG 360 DRIAALQQLV SPFGKTDAAS VLSEAIEYIK FLHQQVSALS NPYMKSGASL QHQQSDHPKE 420 LEVSEEPDLR SRGLCLVPVS STFPVTHDTT VDFWTPTFGG TFR

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MGDHHDFINS GSWWKVSSSS STSSSSSMRA SSIESGGSAV FHDKLHHHSL ATDHHLQMIG  60
LGLSSQSPVD QWNQSLLRGD SKAETSFGVM LQENLNLDAT SNANANTTSS TTSYHLQESD  120
SSHHHQALWR DPQINNNNDF KPQLNMTSNN RGFFLDHQFS PHGSSSTDSS TVTCQGFSVD  180
NSSNTLYGAA ATATPNSSSA MFHHQQHQGA GFSLPGSSDQ QPSRNHQQSN LGYSQFGSST  240
GNYDQMATAL PSTWFLRSSP PKPHSPLRFS NNATFWNPAA SAGNAGPTHH DASSNFFPAL  300
QPPQIHAPSF DEQPKSISEI RDSSSNEVKR GGGDQPATKR AKSEAASPSP AFKVRKEKMG  360
DRIAALQQLV SPFGKTDAAS VLSEAIEYIK FLHQQVSALS NPYMKSGASL QHQQSDHPKE  420
LEVSEEPDLR SRGLCLVPVS STFPVTHDTT VDFWTPTFGG TFR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp3g18680

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118054	0.0	AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
GenBank	BT008580	0.0	BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009145606.1	0.0	PREDICTED: transcription factor bHLH123 isoform X2
Swissprot	Q8GXT3	0.0	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A3P5Z7X7	0.0	A0A3P5Z7X7_BRACM; Uncharacterized protein
STRING	Bra035761.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4024	25	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]