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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Tp3g17620 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
| Family |
C2H2 |
| Protein Properties |
Length: 279aa MW: 30293.1 Da PI: 8.8158 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp3g17620 | genome | thellungiella | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.4 | 0.00011 | 114 | 136 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
ykC+ Cgk F++ L H +H
Tp3g17620 114 YKCSVCGKAFPSYQALGGHKASH 136
9***********99999998887 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0009793 | Biological Process | embryo development ending in seed dormancy |
| GO:0010200 | Biological Process | response to chitin |
| GO:0042538 | Biological Process | hyperosmotic salinity response |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 279 aa
Download sequence Send
to blast |
MALEAMNSPT PPSSFTVRKD RIEATDDLMN DAVFMEPWLK RKRSKRQRSH SPSSSSSSPP 60
RSRPKSQNQD LTEEEYLALC LLMLAKDQPS VHQPQTRFHQ PSPPAPQEST KVSYKCSVCG 120
KAFPSYQALG GHKASHRIKP PTTADDSTAQ STAVAGEKHP NSTAVAPSGK IHECSICHKV 180
FPTGQALGGH KRCHYEGNLG GGGGGSKSIS HSGSVSSTVS EERSHRGFID LNLPALPELS 240
LHHNSVVDEE ILSPLTGKKP LLLTDHDQVI KKEDLSLRI
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. Acts as a negative regulator of abscisic acid (ABA) signaling during seed germination. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. May act as a positive regulator of leaf senescence. Has been identified as a suppressor of the deficiency of yeast snf4 mutant to grow on non-fermentable carbon source. {ECO:0000269|PubMed:10929106, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415, ECO:0000269|PubMed:22709441}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By abscisic acid (ABA), ethylene, salt, cold, dehydration and the monovalent and divalent cations Li(+), Na(+), K(+), Cs(+), Ca(2+) and Mg(2+). {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK353111 | 0.0 | AK353111.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-D01. |
| GenBank | DQ869034 | 0.0 | DQ869034.1 Thellungiella halophila C2H2 zinc finger protein 1 (ZF1) mRNA, complete cds. |
