PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g16510
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 308aa    MW: 35091.4 Da    PI: 7.0448
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g16510genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.47.9e-5551311129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                lppGfrFhPtdeel+++yL++kv++  ++  +++ +vd++k+ePwdLp+k++ +ekewyfF  rd+ky+tg r+nrat++gyWk+tgkdke+++ +g lv
  Tp3g16510   5 LPPGFRFHPTDEELITHYLCRKVSDIGFTG-KAVVDVDLNKYEPWDLPAKASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIYR-SGVLV 102
                79*************************999.88***************999999****************************************.999** PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrle 129
                g+kktLvfykgrapkgek++Wvmheyrle
  Tp3g16510 103 GMKKTLVFYKGRAPKGEKSNWVMHEYRLE 131
                ***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-633151IPR003441NAC domain
PROSITE profilePS5100560.1255151IPR003441NAC domain
PfamPF023651.8E-286130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT HYLCRKVSDI GFTGKAVVDV DLNKYEPWDL PAKASMGEKE  60
WYFFNLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIYRSGV LVGMKKTLVF YKGRAPKGEK  120
SNWVMHEYRL ENKQPFKSAK EEWVVCRVFQ KSTATKKPQE QQPQSSFGSP CDANSSMANE  180
FEDIDLPNLN SISSPVDYNH IHQYSQNNVY SSEDNTTSTA GLNMNMNMNM ATTMPSWTTS  240
LLGPPLSPIN SLLLKAFQIR NSYSFPKEMI SNINPSPLQQ GVSNIMQNGS SSSQPQPQEE  300
AFNMDSMW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-59415716171NO APICAL MERISTEM PROTEIN
1ut4_B7e-59415716171NO APICAL MERISTEM PROTEIN
1ut7_A7e-59415716171NO APICAL MERISTEM PROTEIN
1ut7_B7e-59415716171NO APICAL MERISTEM PROTEIN
3swm_A8e-59415719174NAC domain-containing protein 19
3swm_B8e-59415719174NAC domain-containing protein 19
3swm_C8e-59415719174NAC domain-containing protein 19
3swm_D8e-59415719174NAC domain-containing protein 19
3swp_A8e-59415719174NAC domain-containing protein 19
3swp_B8e-59415719174NAC domain-containing protein 19
3swp_C8e-59415719174NAC domain-containing protein 19
3swp_D8e-59415719174NAC domain-containing protein 19
4dul_A7e-59415716171NAC domain-containing protein 19
4dul_B7e-59415716171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g16510
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266581e-145AB026658.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24.
GenBankCP0026861e-145CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022576079.10.0NAC domain-containing protein 100
SwissprotQ9FLJ21e-82NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A397ZCG50.0A0A397ZCG5_BRACM; Uncharacterized protein
STRINGBra022319.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55272649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.10.0NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]