PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g16490
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HB-other
Protein Properties Length: 349aa    MW: 38660.9 Da    PI: 8.5888
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g16490genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.94.6e-0533742455
               S--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
   Homeobox 24 ypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                p ++  e LA+k            ++ +q+ +WFqNrR+  
  Tp3g16490 33 MPGRHILEALADKFsetverkgkiVVQFKQIWNWFQNRRYAL 74
               56666666666666666666665567789**********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0021781IPR001356Homeobox domain
SuperFamilySSF466893.59E-91278IPR009057Homeodomain-like
CDDcd000860.004231375No hitNo description
Gene3DG3DSA:1.10.10.601.7E-51379IPR009057Homeodomain-like
PfamPF167193.3E-41143271IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFNLSEVT EMEAILLQHN TAMPGRHILE ALADKFSETV ERKGKIVVQF  60
KQIWNWFQNR RYALRARGNK APGKLNVSSM PRSVDLTNQM RNVLQPSAGP KTVHMTGNLP  120
AMMPAPSGIL VPGVMRSGSD NSYLEFEAKS ARDGAWYDVQ AFLAHRNLET GDPEVQVRFA  180
GFEVEEDEWI NVKKHVRQRS LPCEASECVA VLAGDLVLCF QEGKDQALYF DAIVLDAQRR  240
RHDVRGCRCR FLVRYSHDQS EQEIVPLRKI CRRPETDYRL QQLHSAANDF ANSNQLQKPA  300
ADAAAKTPLS QPGPSVPIVP TELKDPSLTA APATLVHPSS NATVPAGSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A7e-461442754134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B7e-461442754134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A7e-461442754134SHH1 SAWADEE
4iur_B7e-461442754134SHH1 SAWADEE
4iut_A7e-461442754134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B7e-461442754134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A7e-461442754134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B7e-461442754134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A7e-461442754134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B7e-461442754134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g16490
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0930420.0AY093042.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds.
GenBankBT0034280.0BT003428.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885254.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ70.0SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A1J3FHJ00.0A0A1J3FHJ0_NOCCA; Protein SAWADEE HOMEODOMAIN-like protein 2
STRINGfgenesh2_kg.3__2039__AT3G18380.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73992437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.20.0sequence-specific DNA binding transcription factors;sequence-specific DNA binding