PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g15230
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 327aa    MW: 37967.1 Da    PI: 10.6928
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g15230genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.58.2e-2119112198
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                ffk++ ++d +++++  +p +f+ ++ ++k  s +++++ ++g sW+v +  +k+++  y+ ++GW++Fv++n L e++f++F+++g+++f  +v +++
  Tp3g15230  19 FFKIFQSADLSSECMRAIPYNFM-KNVSNKDFSYKMVIRAQWGSSWQVDI--SKNPRFyYMEKSGWNQFVRDNALGENEFITFTHKGQMCF--NVNIYE 112
                99*********************.66567789******************..******566669**********************99***..777765 PP
2B332.51.5e-102383121390
                TT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
         B3  13 sgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                ++ l +p+ f e+h   ++es++ t+ +++g  sW+v +    +  r+++++GW++ +++  L  gD ++Fkl++ +ef
  Tp3g15230 238 LKFLAIPRFFEEAHI--PNESRMYTIHHSKGkGSWKVLC--LVRETRTIFSSGWSKLAREFPLSIGDRCTFKLIKPTEF 312
                456899999988885..4467788888877768******..8888889*************************986666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-2013115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-2114119IPR015300DNA-binding pseudobarrel domain
CDDcd100173.12E-1718111No hitNo description
PROSITE profilePS5086313.29619114IPR003340B3 DNA binding domain
SMARTSM010191.8E-2319114IPR003340B3 DNA binding domain
PfamPF023622.4E-1919112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-14223314IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-16224315IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.673226320IPR003340B3 DNA binding domain
CDDcd100173.28E-8227316No hitNo description
SMARTSM010191.1E-9229319IPR003340B3 DNA binding domain
PfamPF023622.8E-9235312IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGWNSGFSRI KEERKNLSFF KIFQSADLSS ECMRAIPYNF MKNVSNKDFS YKMVIRAQWG  60
SSWQVDISKN PRFYYMEKSG WNQFVRDNAL GENEFITFTH KGQMCFNVNI YEHNGKEILI  120
PRKPPTTTPF SGIKKERGES SYKDVKKEEE TGESMVGVEV KVRTNKAEES KTSKKKMKIK  180
SKKVVNAVEI GESSRGIKLK GRQKKAEKSK TSKKKKIKSK KVKNGVPEFK MTIRKSYLKF  240
LAIPRFFEEA HIPNESRMYT IHHSKGKGSW KVLCLVRETR TIFSSGWSKL AREFPLSIGD  300
RCTFKLIKPT EFLLISKKAR EEITIID
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202220QKKAEKSKTSKKKKIKSKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g15230
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406779.11e-178B3 domain-containing protein At3g17010
SwissprotQ9LSP61e-126Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLV4M0A51e-176V4M0A5_EUTSA; Uncharacterized protein
STRINGXP_006406779.11e-177(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.11e-122B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]