PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g15170
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family CAMTA
Protein Properties Length: 848aa    MW: 96248.9 Da    PI: 7.9188
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g15170genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1124.25.6e-39251332118
       CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100
                l+e k+rwl+++ei+a+L n + +++  ++ + p+sg++iL++rk++r+frkDG++wkkkkdg+tv            e +++yYah+e+n tf rrcyw
  Tp3g15170  25 LEEaKSRWLRPNEIHAVLSNPKYFTINVKPVNLPNSGRIILFDRKMLRNFRKDGHNWKKKKDGRTVG---------DEERIHVYYAHGEDNITFVRRCYW 115
                55669************************************************************75.........56899******************* PP

       CG-1 101 lLeeelekivlvhylevk 118
                lL++++e+ivlvhy++++
  Tp3g15170 116 LLDKARENIVLVHYRDTQ 133
                ***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143753.53221138IPR005559CG-1 DNA-binding domain
SMARTSM010761.1E-6324133IPR005559CG-1 DNA-binding domain
PfamPF038593.6E-3327131IPR005559CG-1 DNA-binding domain
SuperFamilySSF812966.44E-14305391IPR014756Immunoglobulin E-set
PfamPF127962.5E-7493571IPR020683Ankyrin repeat-containing domain
CDDcd002041.61E-15499601No hitNo description
SuperFamilySSF484034.82E-17499608IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.7E-17500604IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.777509574IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.915542574IPR002110Ankyrin repeat
SMARTSM002482.0E-6542571IPR002110Ankyrin repeat
SuperFamilySSF525401.5E-6682757IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.144691715IPR000048IQ motif, EF-hand binding site
PfamPF006120.21691707IPR000048IQ motif, EF-hand binding site
SMARTSM0001585706728IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0099729751IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.109730754IPR000048IQ motif, EF-hand binding site
PfamPF006120.0063731751IPR000048IQ motif, EF-hand binding site
SMARTSM0001513807829IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.224808837IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    Send to blast
MDGRLIGSEI HGFHTLQDLD VQTMLEEAKS RWLRPNEIHA VLSNPKYFTI NVKPVNLPNS  60
GRIILFDRKM LRNFRKDGHN WKKKKDGRTV GDEERIHVYY AHGEDNITFV RRCYWLLDKA  120
RENIVLVHYR DTQEAATTSG DSNSPISVSN HSSSNLVAAE DNDFNADNSR YLATNNTPVV  180
RNHEIRLHDI NTLDWDELLV QTDIDNQSAP IIDDLSQFTE QLQNGANGSA EHVNVTMADE  240
SLDALLNNGP QSRESFGRWM NSFIGDSNGS LEDPSFEAMA TLEQDPLAPQ AAFYPHSNIP  300
DQVFKITEVS PTWAYSSEKT KILVTGLLHS SHQHLGSSNL FCICGDSCVP AEYIQAGVYR  360
CFIPPHLPGM ANLYLSADGH KPISQCFSFE HRPVPVFGKT VPEVDQESKW EEFELQVRLV  420
HLLFTSSNKL NVLSSKISPP NLLNAKKLAS KTSHLLNSWA YLIKSVQGNK VSFDQAKDHI  480
FELTLKNRIK EWLMEKVLEG RNTRDYDSKG LGVIHLCAIL GYTWSIQLFS LSGLSLDFRD  540
KQGWTALHWA AYYGREKMVA ALLSAGAKPN LVTDSRKDNL GGCTAADLAQ QNGFDGLAAY  600
LAEKCLVAQF IDMKIAGNIS GNLEACKGEM SNRGAVPDDE QNLKDALAAY RTASEAAARI  660
QGAFREKALK AARSSIIQFA NREEEAKSII AAMKIQNAFR KYDTRRKIEA AYRIQCRFQT  720
WKMRREFLNM RRQAIRIQAA FRGLQARKQY KKIIWSVGVL EKALIRWRQK RKGFRGLQVS  780
QADAEEDPPG QAEEDFYKMS QRQAEERLER SVVRVQAMFR SKKAQEDYRR MKLTHEEAQL  840
EYECLQDI
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:12218065, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g15170
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5100270.0AY510027.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406788.10.0calmodulin-binding transcription activator 6
SwissprotQ9LSP80.0CMTA6_ARATH; Calmodulin-binding transcription activator 6
TrEMBLV4NP000.0V4NP00_EUTSA; Uncharacterized protein
STRINGXP_006406788.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]