PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g13760
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 365aa    MW: 40136.2 Da    PI: 8.4083
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g13760genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.31.5e-53191461128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhPtdeelvv+yLk+k+++ +l++  +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++ ++++
  Tp3g13760  19 LPPGFRFHPTDEELVVHYLKRKAASAPLPV-AIIAEVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLASdGNHK 117
                79****************************.88***************999999***************************************9967888 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kk Lvfy+g+ pkg+k+dW+mheyrl
  Tp3g13760 118 VGVKKALVFYSGKPPKGVKSDWIMHEYRL 146
                ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-6515180IPR003441NAC domain
PROSITE profilePS5100561.99719180IPR003441NAC domain
PfamPF023658.5E-2820146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MESTDSSGGP PPPPPQPNLP PGFRFHPTDE ELVVHYLKRK AASAPLPVAI IAEVDLYKFD  60
PWELPAKASF GEQEWYFFSP RDRKYPNGAR PNRAATSGYW KATGTDKPVL ASDGNHKVGV  120
KKALVFYSGK PPKGVKSDWI MHEYRLIDNK PNNRPPGCDF GNKKNSLRLD DWVLCRIYKK  180
NNAGRHVDND KDHDMIDYIF RKIPPSLSMA AASGLHHNVS RSMNFFPGKF SGGYGIFSDG  240
DQGLYDGTGM INNTNGIADS VNLNVSNGDP NVADVVGLNP ASSSGPMMMA NLKRALPVPF  300
WPVPEEKQDV SPSKRFHGGG DCSNMSTSMM EETPPLMQQQ GGGVLGDGLY RTTSYQLPGL  360
NWYTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-731318511170NO APICAL MERISTEM PROTEIN
1ut4_B2e-731318511170NO APICAL MERISTEM PROTEIN
1ut7_A2e-731318511170NO APICAL MERISTEM PROTEIN
1ut7_B2e-731318511170NO APICAL MERISTEM PROTEIN
3swm_A2e-731318514173NAC domain-containing protein 19
3swm_B2e-731318514173NAC domain-containing protein 19
3swm_C2e-731318514173NAC domain-containing protein 19
3swm_D2e-731318514173NAC domain-containing protein 19
3swp_A2e-731318514173NAC domain-containing protein 19
3swp_B2e-731318514173NAC domain-containing protein 19
3swp_C2e-731318514173NAC domain-containing protein 19
3swp_D2e-731318514173NAC domain-containing protein 19
4dul_A2e-731318511170NAC domain-containing protein 19
4dul_B2e-731318511170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g13760
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532260.0AK353226.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-33-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_188170.10.0NAC domain containing protein 2
SwissprotQ9LD440.0NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A1J3CLH90.0A0A1J3CLH9_NOCCA; NAC domain-containing protein 18
STRINGAT3G15510.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.10.0NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]