PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g12520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ERF | ||||||||
Protein Properties | Length: 378aa MW: 42218.7 Da PI: 4.7459 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 9.2e-20 | 125 | 174 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r +lg+f+taeeAa+a++aa+++++g Tp3g12520 125 QYRGIRQRP-WGKWAAEIRDPRK---GSREWLGTFDTAEEAARAYDAAARRIRG 174 69*******.**********954...39************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.289 | 125 | 182 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-32 | 125 | 183 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.46E-16 | 125 | 157 | No hit | No description |
SuperFamily | SSF54171 | 4.32E-22 | 125 | 183 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.5E-39 | 125 | 188 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 126 | 137 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-12 | 126 | 174 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 148 | 164 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MCGGAIISDF IPPPRSRRVT SEFIWPDLKK KGKASKKRSD FFDLDDEFEA DFQGFKDDSS 60 FDCEVDFDVD DDVFANVKPF VFNAATKPVA SPPIALASTG SVSGKKTVES NGQAEKSAKR 120 KRKNQYRGIR QRPWGKWAAE IRDPRKGSRE WLGTFDTAEE AARAYDAAAR RIRGCKAKVN 180 FPEEKNPSVS QKRPTAKTSN LKKPVAKPNQ SPTLAQPPTH LTQYCNNSFG DMSFMEEKPQ 240 MYNNQFGLTN SFDVGGNNGY QYFSSDQGSN SFDCSEFGWS DHGPKTPEIS SILVNNNQAP 300 FTEETNAPKK LKSNPQDETS NNDRSDELMA YLDNALWESP LEVEDMLGVD AAAVTQEEEN 360 PMDLWSLDDI NSMLEGVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-22 | 124 | 186 | 13 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in carotenoid biosynthesis regulation. Binds to the 5'-ATCTA-3' element present in the promoter of phytoene synthase (PSY) and phytoene desaturase (PDS). Involved in ethylene response and resistance to necrotrophic pathogens. Acts as a downstream regulator in the ethylene signaling pathway. Partially redundant with RAP2-12. {ECO:0000269|PubMed:17873090, ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g12520 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by darkness, ethylene and Botrytis cinerea. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006297883.1 | 0.0 | ethylene-responsive transcription factor RAP2-2 | ||||
Refseq | XP_010487223.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-2-like | ||||
Swissprot | Q9LUM4 | 0.0 | RAP22_ARATH; Ethylene-responsive transcription factor RAP2-2 | ||||
TrEMBL | R0G5V1 | 0.0 | R0G5V1_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1582s0005.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.3 | 0.0 | related to AP2 2 |