PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp3g12040

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

C2H2

Protein Properties

Length: 516aa MW: 56903 Da PI: 8.2877

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp3g12040	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Tp3g12040 96 FVCEICNKGFQRDQNLQLHRRGH 118 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.7E-5	95	118	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.26E-6	95	118	No hit	No description
SMART	SM00355	0.017	96	118	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	96	118	IPR007087	Zinc finger, C2H2
Pfam	PF12171	8.3E-5	96	118	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	98	118	IPR007087	Zinc finger, C2H2
SMART	SM00355	240	138	168	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	6.26E-6	168	193	No hit	No description
SMART	SM00355	170	173	193	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MMNKDMLLHQ QVQQQEENMS NLTSASGDQA SVSSGNRTEA SGSNYFPHHQ QQEEQQQFFV 60 PDSQPQKKRR NQPGNPDPES EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL 120 PWKLKQRSNK EVIRKKVYVC PEASCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCEKCSK 180 KYAVQSDCKA HSKTCGTKEY RCDCGTLFSR RDSFITHRAF CEALAEETAR EVVIPLQQNQ 240 NNQPNPLLIH HPSPPPHHHQ AQPNMNVSSS SSSSHDIINS LHFQTNNNGT VNSNTSSNNL 300 HTFPMKKEEQ QSNDHIISYH QHSIPPWLAP QPQDLTSSNP NPSNGGRGGG LFSLAASPAM 360 SATALLQKAA QMGSTKTPPL PPTTDFERSA HHNNLTTTMA AMMTSPSGFN SSNNNNNQAL 420 FQDYSASGFD HHGGQEPFDD TFGGFLRTNV DTTTASTAGT DKNKSGGGGG VGEGLTRDFL 480 GLRPLMSHNE ILSFAGLGNC INGSASDQLH PKPWQG

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MMNKDMLLHQ QVQQQEENMS NLTSASGDQA SVSSGNRTEA SGSNYFPHHQ QQEEQQQFFV  60
PDSQPQKKRR NQPGNPDPES EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL  120
PWKLKQRSNK EVIRKKVYVC PEASCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCEKCSK  180
KYAVQSDCKA HSKTCGTKEY RCDCGTLFSR RDSFITHRAF CEALAEETAR EVVIPLQQNQ  240
NNQPNPLLIH HPSPPPHHHQ AQPNMNVSSS SSSSHDIINS LHFQTNNNGT VNSNTSSNNL  300
HTFPMKKEEQ QSNDHIISYH QHSIPPWLAP QPQDLTSSNP NPSNGGRGGG LFSLAASPAM  360
SATALLQKAA QMGSTKTPPL PPTTDFERSA HHNNLTTTMA AMMTSPSGFN SSNNNNNQAL  420
FQDYSASGFD HHGGQEPFDD TFGGFLRTNV DTTTASTAGT DKNKSGGGGG VGEGLTRDFL  480
GLRPLMSHNE ILSFAGLGNC INGSASDQLH PKPWQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-32	169	230	3	64	Zinc finger protein JACKDAW
5b3h_F	8e-32	169	230	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	135	KLKQRSNKEVIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00355	DAP	Transfer from AT3G13810	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp3g12040

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF361797	0.0	AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
GenBank	AY091693	0.0	AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006407162.2	0.0	protein indeterminate-domain 11
Refseq	XP_024015104.1	0.0	protein indeterminate-domain 11
Swissprot	Q9LRW7	0.0	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A1J3FCK1	0.0	A0A1J3FCK1_NOCCA; Protein indeterminate-domain 11 (Fragment)
STRING	XP_006407162.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	0.0	indeterminate(ID)-domain 11

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]