PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g11050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | NAC | ||||||||
Protein Properties | Length: 304aa MW: 35147.4 Da PI: 9.0818 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 156.4 | 1.2e-48 | 21 | 149 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 pGfrFhPtdeelv +yL kkv +k +++e+i+++diyk++PwdLp++ ++ eke yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s ++ Tp3g11050 21 LPGFRFHPTDEELVGFYLSKKVLLNKpSKIDEIISQIDIYKFDPWDLPQS-TNAEKENYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSDgsSKG 119 59*******************876664888889***************55.56689**************************************865566 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 ++glkktLv+y g+a kg+ktdW+mhe+rl Tp3g11050 120 VIGLKKTLVYYIGSAGKGSKTDWMMHEFRL 149 6***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 50.636 | 20 | 184 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.67E-50 | 20 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-24 | 22 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MGPWDKRRGE PKQEEEQVLK LPGFRFHPTD EELVGFYLSK KVLLNKPSKI DEIISQIDIY 60 KFDPWDLPQS TNAEKENYFF CKRGRKYRNS IRPNRVTGSG FWKATGIDKP VYSDGSSKGV 120 IGLKKTLVYY IGSAGKGSKT DWMMHEFRLP TANDTIPGGS THLNPTPSSL LHAEVWTLCR 180 IFKRNVSSRK YSPDWRELAG GKRVKPQQSK YQEAYISFGD NESSSNTNNI NVMESKENYE 240 RNVFQIHQTP YQQQPIPMDT NTTQVDNTLV PHFSNDNIHN ITYENWDELR SVVEFASLNQ 300 LFNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-45 | 13 | 190 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-45 | 13 | 190 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-45 | 13 | 190 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-45 | 13 | 190 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-45 | 13 | 190 | 10 | 174 | NAC domain-containing protein 19 |
3swm_B | 6e-45 | 13 | 190 | 10 | 174 | NAC domain-containing protein 19 |
3swm_C | 6e-45 | 13 | 190 | 10 | 174 | NAC domain-containing protein 19 |
3swm_D | 6e-45 | 13 | 190 | 10 | 174 | NAC domain-containing protein 19 |
3swp_A | 6e-45 | 13 | 190 | 10 | 174 | NAC domain-containing protein 19 |
3swp_B | 6e-45 | 13 | 190 | 10 | 174 | NAC domain-containing protein 19 |
3swp_C | 6e-45 | 13 | 190 | 10 | 174 | NAC domain-containing protein 19 |
3swp_D | 6e-45 | 13 | 190 | 10 | 174 | NAC domain-containing protein 19 |
4dul_A | 7e-45 | 13 | 190 | 7 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-45 | 13 | 190 | 7 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00353 | DAP | Transfer from AT3G12910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g11050 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026645 | 1e-107 | AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6. | |||
GenBank | CP002686 | 1e-107 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013673189.1 | 0.0 | transcription factor JUNGBRUNNEN 1 | ||||
Refseq | XP_022567377.1 | 0.0 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 4e-74 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A078GHY0 | 0.0 | A0A078GHY0_BRANA; BnaC01g38180D protein | ||||
STRING | Bra039353.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12910.1 | 1e-175 | NAC family protein |