PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g10880
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 294aa    MW: 33376.8 Da    PI: 8.2426
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g10880genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.9e-182471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G ++W+++++  g+ R++k+c++rw +yl
        Tp3g10880 24 RGLWSPEEDEKLLRYITTHGHPSWSSVPKLAGLQRCGKSCRLRWINYL 71
                     788*******************************************97 PP
2Myb_DNA-binding51.62.1e-1677120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++ +eE++ ++d+++ lG++ W+ Ia++++ gRt++++k++w++
        Tp3g10880  77 RGSFNAEEEQTIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 120
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-251674IPR009057Homeodomain-like
PROSITE profilePS5129417.6531971IPR017930Myb domain
SuperFamilySSF466899.73E-2922118IPR009057Homeodomain-like
SMARTSM007171.1E-122373IPR001005SANT/Myb domain
PfamPF002491.3E-152471IPR001005SANT/Myb domain
CDDcd001676.83E-112771No hitNo description
PROSITE profilePS5129425.52172126IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2575126IPR009057Homeodomain-like
SMARTSM007174.3E-1576124IPR001005SANT/Myb domain
PfamPF002497.7E-1577120IPR001005SANT/Myb domain
CDDcd001676.37E-1179119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MREKWEMKRD EMGHRCCGKH KVKRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLQRCG  60
KSCRLRWINY LRPDLKRGSF NAEEEQTIID VHRILGNKWA QIAKHLPGRT DNEVKNFWNS  120
CIKKKLLSQG LDPSTHNLMP SHKRSASSSN NKIPKPSKTK SIMTNPTFDQ STAAFSITNI  180
NPHSSTKPNR VKSPNRTPVP SQTMIPIKDT LSSLLDDENM IPSWSDVDGM APVHEEAPMF  240
SSEKAVVEVD DDDLNMDFLF NTPSSSTFDP DFASIFSSAM SIDFNPMDDL GWTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29241267108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g10880
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893350.0AC189335.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039A19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009124668.10.0PREDICTED: transcription factor MYB86-like
RefseqXP_013591017.10.0PREDICTED: transcription factor MYB86-like
RefseqXP_022547795.10.0transcription factor MYB86-like
SwissprotQ8LPH64e-67MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A078I1B70.0A0A078I1B7_BRANA; BnaA01g30350D protein
TrEMBLA0A0D3AE630.0A0A0D3AE63_BRAOL; Uncharacterized protein
TrEMBLA0A398AYS50.0A0A398AYS5_BRACM; Uncharacterized protein
TrEMBLA0A3P6FYC60.0A0A3P6FYC6_BRAOL; Uncharacterized protein
TrEMBLM4FE180.0M4FE18_BRARP; Uncharacterized protein
STRINGBra039339.1-P0.0(Brassica rapa)
STRINGBo1g138990.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79552539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-169myb domain protein 67