PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g10830
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 523aa    MW: 57341.3 Da    PI: 7.6337
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g10830genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.81.3e-11178202226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                +++ C ++++t tCk+G++CkF H+
  Tp3g10830 178 GEKDCTHYMQTRTCKFGESCKFDHP 202
                7889********************8 PP
2zf-CCCH331e-10228254127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ++++ C+++ +t  CkyG rCkF+H++
  Tp3g10830 228 PGEPDCPYYIKTQRCKYGLRCKFNHPR 254
                5789*********************96 PP
3zf-CCCH38.51.9e-12273297327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C f+++tG Ck+G +CkF+H++
  Tp3g10830 273 EPPCTFYMKTGKCKFGLTCKFHHPK 297
                79*********************96 PP
4zf-CCCH38.12.5e-12343369127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ++++ C+f+++tG CkyG++C+++H++
  Tp3g10830 343 PGEADCPFYLKTGSCKYGATCRYNHPE 369
                57899********************96 PP
5zf-CCCH40.25.7e-13424448226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                ++++C+++++tG+Ck+G+rC+F+H+
  Tp3g10830 424 GQSECDYYMKTGECKFGERCRFHHP 448
                7899********************8 PP
6zf-CCCH41.42.3e-13480502527
                --SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                +C+++++tGtCkyG++CkF H+p
  Tp3g10830 480 NCPYYMKTGTCKYGATCKFDHPP 502
                6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.817176204IPR000571Zinc finger, CCCH-type
SMARTSM003560.002176203IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9178202IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5178203IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4182201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.76227255IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-4227254IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-7229254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-5232254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4233253IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-6270297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601270298IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-10273297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5274298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5275296IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-7342369IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.554342370IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-10344369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5346370IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-5348369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-7422452IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.047422450IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-6422449IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10424448IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5428449IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6475502IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389475503IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-11480502IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-5480502IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5481500IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MAHRHQLFSY ALQPSYAAAS AVSPVPPQPQ PQPKIGLSSL YGSSAADQYF PDTTFRFLAR  60
DGSESLSNYS SSLATLTSSS GMYHHLPNAT ASHLAYPQLL QQHQEAWPPG VEVPVAASAV  120
EPLPPGVKRT SEALYYPTLL GVHNTIGQTE AWYTTDYLTK RLKLESTSHL PVYPQRPGEK  180
DCTHYMQTRT CKFGESCKFD HPIWVPEGGI PDWKEAPLVP NDDYPERPGE PDCPYYIKTQ  240
RCKYGLRCKF NHPRAAAAVI VENQDALPER PSEPPCTFYM KTGKCKFGLT CKFHHPKDIQ  300
LPSSSQDNGS SEAVTSDPDA TNNPHVTYAP ASYHNSKGLP VRPGEADCPF YLKTGSCKYG  360
ATCRYNHPER TAFTPQAAGI NYPLVSSTPA SVNLELVNSA ASLYQTLAQP TLGALPAIYP  420
QRPGQSECDY YMKTGECKFG ERCRFHHPAD RINATSKPAS QHPNVKLSLA GYPRREGALN  480
CPYYMKTGTC KYGATCKFDH PPPGEVMAKT TSEADAGGGT DTS
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g10830
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2291450.0AK229145.1 Arabidopsis thaliana mRNA for floral homeotic protein HUA1, partial cds, clone: RAFL16-42-O16.
GenBankAY0243570.0AY024357.1 Arabidopsis thaliana floral homeotic protein HUA1 (HUA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407309.10.0zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLV4M1Q90.0V4M1Q9_EUTSA; Uncharacterized protein
STRINGXP_006407309.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97612836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)