PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g09820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | B3 | ||||||||
Protein Properties | Length: 257aa MW: 28835.9 Da PI: 7.4973 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 67.7 | 1.6e-21 | 32 | 113 | 1 | 67 |
EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWke 67 f+k ltpsdv+k++rlv+pk++ae++ + +e+++ l++ede+g+ W+++++y+++s++yvltkGW++ Tp3g09820 32 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnnggggggddvtAETTEKGMLLSFEDETGKCWKFRYSYWNSSQSYVLTKGWSR 113 99*********************************999998777789*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-27 | 25 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.57E-20 | 29 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.40E-19 | 31 | 121 | No hit | No description |
SMART | SM01019 | 1.0E-9 | 32 | 150 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-18 | 32 | 113 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MSVNHYPRDI NHNNLPLHHH QNDGVSHRES LFEKSLTPSD VGKLNRLVIP KQHAEKYFPL 60 NNGGGGGGDD VTAETTEKGM LLSFEDETGK CWKFRYSYWN SSQSYVLTKG WSRGRCFFQR 120 HLFDLHRLFI GWRRRGEASS SPAVSVVSQE ARVNTTAYWN GLTTPYRQVH ASASSYPNIH 180 QEHSHYGAVA ETPTVVAGSS RTVRLFGVNL ECHGDVVEPP PCPDGYNGQH IYYYSTPHPM 240 NISFAGEAME QVGDGRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 5e-37 | 25 | 135 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 5e-37 | 25 | 135 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g09820 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ441076 | 1e-117 | AJ441076.1 Arabidopsis thaliana mRNA for putative auxin response factor 32 (arf32 gene). | |||
GenBank | AK175281 | 1e-117 | AK175281.1 Arabidopsis thaliana mRNA for putative DNA binding protein, complete cds, clone: RAFL21-71-N13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024015755.1 | 1e-157 | B3 domain-containing protein At3g11580 | ||||
Swissprot | Q8RYD3 | 1e-139 | Y3158_ARATH; B3 domain-containing protein At3g11580 | ||||
TrEMBL | A0A398AUU7 | 1e-154 | A0A398AUU7_BRACM; Uncharacterized protein | ||||
TrEMBL | M4FIU4 | 1e-154 | M4FIU4_BRARP; Uncharacterized protein | ||||
STRING | Bra041023.1-P | 1e-155 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1220 | 28 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11580.1 | 1e-131 | B3 family protein |
Publications ? help Back to Top | |||
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