PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g09390
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 228aa    MW: 25787.4 Da    PI: 8.2046
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g09390genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.51.5e-1020683588
               EEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
         B3 35 tltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                ++l+   s  +Wevk+  ++++    lt+GW++F+  ++L++gD+ +F++dg+ 
  Tp3g09390 20 VVKLRAdASDLTWEVKM--DGRR----LTQGWQKFATGHDLRVGDIGIFRRDGDL 68
               4455443888*******..9998....***********************66543 PP
2B347.62.9e-15130226198
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                f++ ++++++lk+ rl+lp kf+  +g++++  +++tl d+ g +++  l+ ++k gr+ l+k W++F++ n++++g+++ ++l+++ ++++ ++k+++
  Tp3g09390 130 FLTLTLTPYNLKKFRLCLPGKFLCLNGIENA--RKITLVDRYGITMTTSLKPDNKYGRMRLGKEWRKFCEVNEVNAGESFKLELIKEeDTETHLLKFCS 226
                6778899***************988887754..58***************99*********************************99666666777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.644178IPR003340B3 DNA binding domain
SMARTSM010190.01378IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-121585IPR015300DNA-binding pseudobarrel domain
CDDcd100172.69E-72073No hitNo description
Gene3DG3DSA:2.40.330.104.1E-152085IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-17122226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-17127226IPR015300DNA-binding pseudobarrel domain
CDDcd100173.57E-13129215No hitNo description
PfamPF023625.1E-14130227IPR003340B3 DNA binding domain
SMARTSM010191.6E-15130228IPR003340B3 DNA binding domain
PROSITE profilePS5086310.602130227IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAFYLKHIKG TTNEGNANAV VKLRADASDL TWEVKMDGRR LTQGWQKFAT GHDLRVGDIG  60
IFRRDGDLLF HVTAVGPSCC EIQYDDDDGD DDVIQISSGT KPVLQLCSSV YNRHCLRSSS  120
SSSSTSQDRF LTLTLTPYNL KKFRLCLPGK FLCLNGIENA RKITLVDRYG ITMTTSLKPD  180
NKYGRMRLGK EWRKFCEVNE VNAGESFKLE LIKEEDTETH LLKFCSKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g09390
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641259.12e-83B3 domain-containing protein REM14
TrEMBLA0A397ZEZ04e-72A0A397ZEZ0_BRACM; Uncharacterized protein
STRINGBo3g063920.16e-62(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.18e-47B3 family protein